About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01053REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01054HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides01055ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides01056HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides01057-
Paelopatides01058MATRIX METALLOPROTEINASE
Paelopatides01059CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01060TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 61F
Paelopatides0106140S RIBOSOMAL PROTEIN S8
Paelopatides01062COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides01063ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01064-
Paelopatides01065ALDEHYDE DEHYDROGENASE-RELATED
Paelopatides01066-
Paelopatides01067-
Paelopatides01068RNA-BINDING PROTEIN
Paelopatides01069-
Paelopatides01070PROTEIN CBG26694
Paelopatides01071DIABLO HOMOLOG, MITOCHONDRIAL
Paelopatides01072-
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