About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01179-
Paelopatides01180-
Paelopatides01181DENTIN SIALOPHOSPHOPROTEIN
Paelopatides01182UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides01183-
Paelopatides01184-
Paelopatides01185DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides01186-
Paelopatides01187SI:CH211-108C17.2-RELATED-RELATED
Paelopatides01188ZGC:195170
Paelopatides01189ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01190FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides01193ROTATIN
Paelopatides01196REVERSE TRANSCRIPTASES
Paelopatides0119760S RIBOSOMAL PROTEIN L17
Paelopatides01199RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF
Paelopatides01200CREB-REGULATED TRANSCRIPTION COACTIVATOR
Paelopatides01201CREB-REGULATED TRANSCRIPTION COACTIVATOR
Paelopatides01202-
Paelopatides01203THROMBOSPONDIN
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