About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01373PROTEIN CBG26694
Paelopatides01374ENZYMATIC POLYPROTEIN-RELATED
Paelopatides01375-
Paelopatides01376REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01377-
Paelopatides01378PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides01379ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01380SULFOTRANSFERASE SULT
Paelopatides01381SULFOTRANSFERASE SULT
Paelopatides01382REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01383REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01384PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides01385-
Paelopatides01386GEO11136P1-RELATED
Paelopatides01387MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
Paelopatides01388SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Paelopatides01389SERINE/THREONINE-PROTEIN KINASE RIO1
Paelopatides01390PARANEOPLASTIC ANTIGEN
Paelopatides01391TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides01392ENDONUCLEASE-RELATED
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