About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01333CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01334-
Paelopatides01335-
Paelopatides01336-
Paelopatides01337-
Paelopatides01338TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides01339NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides01340LEPRECAN 1
Paelopatides01341-
Paelopatides01342-
Paelopatides01343MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12
Paelopatides01344MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12
Paelopatides01345-
Paelopatides01346UNCHARACTERIZED
Paelopatides01347HEAT SHOCK PROTEIN 70KDA
Paelopatides01348-
Paelopatides01349REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01350BUCENTAUR RELATED
Paelopatides01351ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01352ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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