About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01515RETROTRANSPOSON
Paelopatides01516F-BOX ONLY PROTEIN 15
Paelopatides01517-
Paelopatides01518-
Paelopatides01519-
Paelopatides01520MULTICOPPER OXIDASE-RELATED
Paelopatides01521ENDONUCLEASE-RELATED
Paelopatides01522BONUS, ISOFORM C-RELATED
Paelopatides01523TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides01524ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides01525PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides01526TRANSPOSON
Paelopatides01527REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01528-
Paelopatides01529-
Paelopatides01530TELOMERASE PROTEIN COMPONENT 1 TEP1
Paelopatides01531FORMIN HOMOLOGY 2 FAMILY MEMBER
Paelopatides01532PROTEIN CBG26694
Paelopatides01533METHYLTRANSFERASE
Paelopatides01534TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE
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