About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01556ACROSIN-RELATED
Paelopatides01557GLYCOLIPID TRANSFER PROTEIN-RELATED
Paelopatides01558ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01559-
Paelopatides01560-
Paelopatides01561AMINE OXIDASE
Paelopatides01562TRANSPOSON
Paelopatides01563TRANSMEMBRANE PROTEIN 163
Paelopatides01564-
Paelopatides01565-
Paelopatides01566MYOSIN
Paelopatides01567-
Paelopatides01568REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01569ENDONUCLEASE-RELATED
Paelopatides01570ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01571DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides01572-
Paelopatides01573PARANEOPLASTIC ANTIGEN
Paelopatides01574PROTEIN CBG26694
Paelopatides01575SI:CH211-266K2.1
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