About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01617CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR
Paelopatides01618REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01619REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01620EPM2A-INTERACTING PROTEIN 1
Paelopatides01621PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides01622VINCULIN
Paelopatides01623HIKESHI FAMILY MEMBER
Paelopatides01624SPINAL CORD EXPRESSION PROTEIN 4
Paelopatides01625ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides01626PROTEIN CBG26694
Paelopatides01627POL PROTEIN
Paelopatides01628-
Paelopatides01629-
Paelopatides01630-
Paelopatides01631PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides01632PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides01633-
Paelopatides01634PROTEIN CBG26694
Paelopatides01635-
Paelopatides01636FI04487P
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