About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01535TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE
Paelopatides01536HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides01537-
Paelopatides01538ATM INTERACTOR
Paelopatides01539ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides01540-
Paelopatides01541-
Paelopatides01542-
Paelopatides01544-
Paelopatides01545-
Paelopatides01546GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
Paelopatides01547DENTIN SIALOPHOSPHOPROTEIN
Paelopatides01548UNCHARACTERIZED
Paelopatides01549ENDONUCLEASE-RELATED
Paelopatides01550UNCHARACTERIZED
Paelopatides01551TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR
Paelopatides01552UNCHARACTERIZED
Paelopatides01553REVERSE TRANSCRIPTASES
Paelopatides01554DYNEIN 2 LIGHT INTERMEDIATE CHAIN, ISOFORM 2
Paelopatides01555ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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