Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s005.g0173.t1 | POLY [ADP-RIBOSE] POLYMERASE |
| Lsat_s005.g0174.t1 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
| Lsat_s005.g0175.t1 | RUN AND SH3 DOMAIN CONTAINING |
| Lsat_s005.g0176.t1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| Lsat_s005.g0177.t1 | PROTEIN PHOSPHATASE INHIBITOR |
| Lsat_s005.g0178.t1 | DEUBIQUITINATING PROTEIN VCIP135 |
| Lsat_s005.g0179.t1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| Lsat_s005.g0180.t1 | TETRASPANIN |
| Lsat_s005.g0181.t1 | HEME OXYGENASE |
| Lsat_s005.g0182.t1 | REPETIN |
| Lsat_s005.g0183.t1 | PEPTIDYLPROLYL ISOMERASE |
| Lsat_s005.g0184.t1 | ZINC FINGER PROTEIN |
| Lsat_s005.g0185.t1 | ADAPTER PROTEIN CIKS |
| Lsat_s005.g0186.t1 | SERINE PROTEASE-RELATED |
| Lsat_s005.g0187.t1 | GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1 |
| Lsat_s005.g0188.t1 | WD40 REPEAT PROTEIN 4 |
| Lsat_s005.g0189.t1 | TRANSCRIPTION FACTOR ONECUT |
| Lsat_s005.g0190.t1 | SERINE/THREONINE-PROTEIN KINASE 17 |
| Lsat_s005.g0191.t1 | |
| Lsat_s005.g0192.t1 | PDZ AND LIM DOMAIN PROTEIN ZASP |
| Lsat_s005.g0193.t1 | |
| Lsat_s005.g0194.t1 | |
| Lsat_s005.g0195.t1 | |
| Lsat_s005.g0196.t1 | |
| Lsat_s005.g0197.t1 | |
| Lsat_s005.g0198.t1 | |
| Lsat_s005.g0199.t1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Lsat_s005.g0200.t1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Lsat_s005.g0201.t1 | GABA-B RECEPTOR |
| Lsat_s005.g0202.t1 | |
| Lsat_s005.g0203.t1 | |
| Lsat_s005.g0204.t1 | OXIDOREDUCTASE HTATIP2 |
| Lsat_s005.g0205.t1 | |
| Lsat_s005.g0206.t1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT |
| Lsat_s005.g0207.t1 | |
| Lsat_s005.g0208.t1 | |
| Lsat_s005.g0209.t1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| Lsat_s005.g0210.t1 | - |
| Lsat_s005.g0211.t1 | EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN |
| Lsat_s005.g0212.t1 | PROTEIN PHOSPHATASE 2C |
| Lsat_s005.g0213.t1 | VESICULAR-FUSION PROTEIN NSF |
| Lsat_s005.g0214.t1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| Lsat_s005.g0215.t1 | PROTEIN CBG26694 |
| Lsat_s005.g0216.t1 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
| Lsat_s005.g0217.t1 | COP9 SIGNALOSOME COMPLEX SUBUNIT 8 |
| Lsat_s005.g0218.t1 | UNCHARACTERIZED |
| Lsat_s005.g0219.t1 | |
| Lsat_s005.g0220.t1 | |
| Lsat_s005.g0221.t1 | |
| Lsat_s005.g0222.t1 |
