Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s004.g0636.t1 | |
| Lsat_s004.g0637.t1 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Lsat_s004.g0638.t1 | |
| Lsat_s004.g0639.t1 | UNCHARACTERIZED |
| Lsat_s004.g0640.t1 | |
| Lsat_s004.g0641.t1 | PICCOLO/BASSOON |
| Lsat_s004.g0642.t1 | SOLEUCYL-TRNA SYNTHETASE |
| Lsat_s004.g0643.t1 | SPHINGOSINE KINASE |
| Lsat_s004.g0644.t1 | |
| Lsat_s004.g0645.t1 | |
| Lsat_s004.g0646.t1 | |
| Lsat_s004.g0647.t1 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Lsat_s004.g0648.t1 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Lsat_s004.g0649.t1 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Lsat_s004.g0650.t1 | ACYL-COA DEHYDROGENASE |
| Lsat_s004.g0651.t1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| Lsat_s004.g0652.t1 | SACCHAROPINE DEHYDROGENASE |
| Lsat_s004.g0653.t1 | AMINOMETHYLTRANSFERASE |
| Lsat_s004.g0654.t1 | INHIBITOR OF GROWTH PROTEIN |
| Lsat_s004.g0655.t1 | |
| Lsat_s004.g0656.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Lsat_s004.g0657.t1 | |
| Lsat_s004.g0658.t1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| Lsat_s004.g0659.t1 | |
| Lsat_s004.g0660.t1 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED |
| Lsat_s004.g0661.t1 | VACUOLAR MEMBRANE PROTEIN YPL162C |
| Lsat_s004.g0662.t1 | POLYCOMB GROUP PROTEIN |
| Lsat_s004.g0663.t1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| Lsat_s005.g0001.t1 | PROTEIN CBG17025 |
| Lsat_s005.g0002.t1 | SPORE COAT PROTEIN SP85 |
| Lsat_s005.g0003.t1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| Lsat_s005.g0004.t1 | |
| Lsat_s005.g0005.t1 | |
| Lsat_s005.g0006.t1 | GLYCOPROTEIN HORMONE RECEPTOR |
| Lsat_s005.g0007.t1 | |
| Lsat_s005.g0008.t1 | THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 |
| Lsat_s005.g0009.t1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 18 |
| Lsat_s005.g0010.t1 | SEC61 SUBUNIT BETA |
| Lsat_s005.g0011.t1 | COILIN |
| Lsat_s005.g0012.t1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| Lsat_s005.g0013.t1 | |
| Lsat_s005.g0014.t1 | |
| Lsat_s005.g0015.t1 | |
| Lsat_s005.g0016.t1 | |
| Lsat_s005.g0017.t1 | - |
| Lsat_s005.g0018.t1 | |
| Lsat_s005.g0019.t1 | |
| Lsat_s005.g0020.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
| Lsat_s005.g0021.t1 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
| Lsat_s005.g0022.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
