Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s004.g0586.t1 | |
| Lsat_s004.g0587.t1 | |
| Lsat_s004.g0588.t1 | |
| Lsat_s004.g0589.t1 | RGD1565685 PROTEIN |
| Lsat_s004.g0590.t1 | |
| Lsat_s004.g0591.t1 | |
| Lsat_s004.g0592.t1 | |
| Lsat_s004.g0593.t1 | VPRBP PROTEIN-RELATED |
| Lsat_s004.g0594.t1 | ENOLASE (DUF1399) |
| Lsat_s004.g0595.t1 | ENOLASE (DUF1399) |
| Lsat_s004.g0596.t1 | |
| Lsat_s004.g0597.t1 | |
| Lsat_s004.g0598.t1 | ENOLASE (DUF1399) |
| Lsat_s004.g0599.t1 | |
| Lsat_s004.g0600.t1 | LITHOSTATHINE |
| Lsat_s004.g0601.t1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Lsat_s004.g0602.t1 | |
| Lsat_s004.g0603.t1 | |
| Lsat_s004.g0604.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
| Lsat_s004.g0605.t1 | LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN |
| Lsat_s004.g0606.t1 | MOLTING PROTEIN MLT-4 |
| Lsat_s004.g0607.t1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO |
| Lsat_s004.g0608.t1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| Lsat_s004.g0609.t1 | |
| Lsat_s004.g0610.t1 | |
| Lsat_s004.g0611.t1 | |
| Lsat_s004.g0612.t1 | COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER |
| Lsat_s004.g0613.t1 | WD REPEAT-CONTAINING PROTEIN 97 |
| Lsat_s004.g0614.t1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 |
| Lsat_s004.g0615.t1 | PROTEIN MCM10 HOMOLOG |
| Lsat_s004.g0616.t1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| Lsat_s004.g0617.t1 | ATP SYNTHASE GAMMA CHAIN |
| Lsat_s004.g0618.t1 | SORTILIN RELATED |
| Lsat_s004.g0619.t1 | HIGH MOBILITY GROUP PROTEINS HMG-A AND C |
| Lsat_s004.g0620.t1 | HEMK METHYLTRANSFERASE |
| Lsat_s004.g0621.t1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Lsat_s004.g0622.t1 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| Lsat_s004.g0623.t1 | PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED |
| Lsat_s004.g0624.t1 | |
| Lsat_s004.g0625.t1 | |
| Lsat_s004.g0626.t1 | |
| Lsat_s004.g0627.t1 | |
| Lsat_s004.g0628.t1 | |
| Lsat_s004.g0629.t1 | COPINE |
| Lsat_s004.g0630.t1 | FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATED |
| Lsat_s004.g0631.t1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S25 |
| Lsat_s004.g0632.t1 | ARMADILLO REPEAT CONTAINING PROTEIN |
| Lsat_s004.g0633.t1 | |
| Lsat_s004.g0634.t1 | INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN |
| Lsat_s004.g0635.t1 |
