Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s004.g0486.t1 | UNCHARACTERIZED |
| Lsat_s004.g0487.t1 | |
| Lsat_s004.g0488.t1 | |
| Lsat_s004.g0489.t1 | |
| Lsat_s004.g0490.t1 | |
| Lsat_s004.g0491.t1 | LD33804P |
| Lsat_s004.g0492.t1 | FAMILY WITH SEQUENCE SIMILARITY 228 MEMBER A |
| Lsat_s004.g0493.t1 | FAMILY WITH SEQUENCE SIMILARITY 228 MEMBER A |
| Lsat_s004.g0494.t1 | FAMILY WITH SEQUENCE SIMILARITY 228 MEMBER A |
| Lsat_s004.g0495.t1 | |
| Lsat_s004.g0496.t1 | MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B |
| Lsat_s004.g0497.t1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| Lsat_s004.g0498.t1 | UNCHARACTERIZED |
| Lsat_s004.g0499.t1 | |
| Lsat_s004.g0500.t1 | TUBULIN MONOGLYCYLASE TTLL3 |
| Lsat_s004.g0501.t1 | - |
| Lsat_s004.g0502.t1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
| Lsat_s004.g0503.t1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
| Lsat_s004.g0504.t1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Lsat_s004.g0505.t1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Lsat_s004.g0506.t1 | |
| Lsat_s004.g0507.t1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Lsat_s004.g0508.t1 | |
| Lsat_s004.g0509.t1 | |
| Lsat_s004.g0510.t1 | |
| Lsat_s004.g0511.t1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| Lsat_s004.g0512.t1 | THIOESTERASE |
| Lsat_s004.g0513.t1 | UNCHARACTERIZED |
| Lsat_s004.g0514.t1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Lsat_s004.g0515.t1 | DEHYDROGENASE RELATED |
| Lsat_s004.g0516.t1 | |
| Lsat_s004.g0517.t1 | STG PROTEIN |
| Lsat_s004.g0518.t1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Lsat_s004.g0519.t1 | MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 |
| Lsat_s004.g0520.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 2 |
| Lsat_s004.g0521.t1 | MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN |
| Lsat_s004.g0522.t1 | ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED |
| Lsat_s004.g0523.t1 | CHROMOSOME 28 C12ORF29 HOMOLOG |
| Lsat_s004.g0524.t1 | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 |
| Lsat_s004.g0525.t1 | TRNA-DIHYDROURIDINE SYNTHASE |
| Lsat_s004.g0526.t1 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED |
| Lsat_s004.g0527.t1 | SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1 |
| Lsat_s004.g0528.t1 | |
| Lsat_s004.g0529.t1 | |
| Lsat_s004.g0530.t1 | ELKS/RAB6-INTERACTING/CAST PROTEIN |
| Lsat_s004.g0531.t1 | DNA REPAIR AND RECOMBINATION PROTEIN RAD52, RAD59 |
| Lsat_s004.g0532.t1 | UNCHARACTERIZED |
| Lsat_s004.g0533.t1 | ZINC FINGER PROTEIN |
| Lsat_s004.g0534.t1 | LIM DOMAIN-CONTAINING PROTEIN |
| Lsat_s004.g0535.t1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
