Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s005.g0223.t1 | ALKALINE PHOSPHATASE |
| Lsat_s005.g0224.t1 | |
| Lsat_s005.g0225.t1 | |
| Lsat_s005.g0226.t1 | RHO GTPASE-ACTIVATING PROTEIN 190 |
| Lsat_s005.g0227.t1 | NUCLEAR FUSION PROTEIN FUS2 |
| Lsat_s005.g0228.t1 | TUBULIN |
| Lsat_s005.g0229.t1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED |
| Lsat_s005.g0230.t1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
| Lsat_s005.g0231.t1 | |
| Lsat_s005.g0232.t1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Lsat_s005.g0233.t1 | NCK-ASSOCIATED PROTEIN 1 |
| Lsat_s005.g0234.t1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Lsat_s005.g0235.t1 | TUMOR SUPPRESSING SUBTRANSFERABLE CANDIDATE 4 TSSC4 |
| Lsat_s005.g0236.t1 | ACTIN |
| Lsat_s005.g0237.t1 | SOLUTE CARRIER FAMILY 39 |
| Lsat_s005.g0238.t1 | YALI0C04136P |
| Lsat_s005.g0239.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 25 |
| Lsat_s005.g0240.t1 | ATILLA, ISOFORM B-RELATED-RELATED |
| Lsat_s005.g0241.t1 | |
| Lsat_s005.g0242.t1 | ATILLA, ISOFORM B-RELATED-RELATED |
| Lsat_s005.g0243.t1 | |
| Lsat_s005.g0244.t1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Lsat_s005.g0245.t1 | |
| Lsat_s005.g0246.t1 | |
| Lsat_s005.g0247.t1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Lsat_s005.g0248.t1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| Lsat_s005.g0249.t1 | UNCHARACTERIZED |
| Lsat_s005.g0250.t1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| Lsat_s005.g0251.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
| Lsat_s005.g0252.t1 | |
| Lsat_s005.g0253.t1 | LD11652P |
| Lsat_s005.g0254.t1 | |
| Lsat_s005.g0255.t1 | |
| Lsat_s005.g0256.t1 | |
| Lsat_s005.g0257.t1 | FACIOGENITAL DYSPLASIA PROTEIN |
| Lsat_s005.g0258.t1 | |
| Lsat_s005.g0259.t1 | |
| Lsat_s005.g0260.t1 | HOMEOBOX PROTEIN ARISTALESS |
| Lsat_s005.g0261.t1 | KELCH REPEAT DOMAIN |
| Lsat_s005.g0262.t1 | CGI-121 FAMILY MEMBER |
| Lsat_s005.g0263.t1 | |
| Lsat_s005.g0264.t1 | CGI-121 FAMILY MEMBER |
| Lsat_s005.g0265.t1 | CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN |
| Lsat_s005.g0266.t1 | CGI-121 FAMILY MEMBER |
| Lsat_s005.g0267.t1 | OS09G0557700 PROTEIN |
| Lsat_s005.g0268.t1 | GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A4 |
| Lsat_s005.g0269.t1 | RFWD3 PROTEIN |
| Lsat_s005.g0270.t1 | TRANSAMINASE |
| Lsat_s005.g0271.t1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| Lsat_s005.g0272.t1 | WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL |
