The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides37351 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S24 |
| Paelopatides37352 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
| Paelopatides37353 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN |
| Paelopatides37354 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN |
| Paelopatides37355 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
| Paelopatides37356 | 60S RIBOSOMAL PROTEIN L34 |
| Paelopatides37357 | PROTEIN TAG-278-RELATED |
| Paelopatides37358 | VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED |
| Paelopatides37359 | ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS |
| Paelopatides37360 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 |
| Paelopatides37361 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| Paelopatides37362 | DNA REPAIR PROTEIN XRCC2 |
| Paelopatides37363 | THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED |
| Paelopatides37364 | THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED |
| Paelopatides37365 | RIIA DOMAIN-CONTAINING PROTEIN 1 |
| Paelopatides37366 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69 |
| Paelopatides37367 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69 |
| Paelopatides37368 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
| Paelopatides37369 | ACTIN |
| Paelopatides37370 | |
| Paelopatides37371 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides37372 | |
| Paelopatides37373 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| Paelopatides37374 | |
| Paelopatides37375 | |
| Paelopatides37376 | UNCHARACTERIZED |
| Paelopatides37377 | UNCHARACTERIZED |
| Paelopatides37378 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides37379 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| Paelopatides37380 | NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A |
| Paelopatides37381 | FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED |
| Paelopatides37382 | RETROTRANSPOSON |
| Paelopatides37383 | RETROTRANSPOSON |
| Paelopatides37384 | ENZYMATIC POLYPROTEIN-RELATED |
| Paelopatides37385 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| Paelopatides37386 | PROTEIN CBG26694 |
| Paelopatides37387 | PROTEIN CBG26694 |
| Paelopatides37388 | PROTEIN CBG26694 |
| Paelopatides37389 | |
| Paelopatides37390 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides37391 | SRCR DOMAIN-CONTAINING PROTEIN |
| Paelopatides37392 | |
| Paelopatides37393 | |
| Paelopatides37395 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| Paelopatides37396 | |
| Paelopatides37397 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides37398 | |
| Paelopatides37400 | - |
| Paelopatides37401 | - |
| Paelopatides37402 | UNCHARACTERIZED |
