The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides37027 | ENDOPLASMIC RETICULUM RESIDENT PROTEIN 44 |
| Paelopatides37028 | UNCHARACTERIZED |
| Paelopatides37029 | PROTEIN CBG12474 |
| Paelopatides37030 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B |
| Paelopatides37031 | NUCLEAR HORMONE RECEPTOR |
| Paelopatides37032 | COILED-COIL DOMAIN-CONTAINING PROTEIN 103 |
| Paelopatides37033 | COILED-COIL DOMAIN-CONTAINING PROTEIN 103 |
| Paelopatides37034 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
| Paelopatides37035 | E3 UBIQUITIN-PROTEIN LIGASE UBR7 |
| Paelopatides37036 | |
| Paelopatides37037 | E3 UBIQUITIN-PROTEIN LIGASE UBR7 |
| Paelopatides37038 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides37039 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides37040 | GLYCOPROTEIN HORMONE RECEPTOR |
| Paelopatides37041 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A |
| Paelopatides37042 | |
| Paelopatides37043 | |
| Paelopatides37044 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides37045 | NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC |
| Paelopatides37046 | |
| Paelopatides37047 | |
| Paelopatides37048 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Paelopatides37049 | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED |
| Paelopatides37050 | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED |
| Paelopatides37051 | REVERSE TRANSCRIPTASES |
| Paelopatides37052 | COLORECTAL MUTANT CANCER PROTEIN MCC PROTEIN -RELATED |
| Paelopatides37053 | |
| Paelopatides37054 | |
| Paelopatides37055 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Paelopatides37057 | PROTEIN CBG26694 |
| Paelopatides37058 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Paelopatides37059 | |
| Paelopatides37060 | NACHT DOMAIN-CONTAINING PROTEIN |
| Paelopatides37061 | DESUMOYLATING ISOPEPTIDASE |
| Paelopatides37062 | |
| Paelopatides37063 | LEUCOKININ RECEPTOR-RELATED |
| Paelopatides37064 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides37065 | |
| Paelopatides37066 | SI:CH211-108C17.2-RELATED-RELATED |
| Paelopatides37067 | ENZYMATIC POLYPROTEIN-RELATED |
| Paelopatides37068 | APOLIPOPROTEIN L |
| Paelopatides37069 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides37070 | MULTICOPPER OXIDASE-RELATED |
| Paelopatides37071 | |
| Paelopatides37072 | RAS-LIKE FAMILY MEMBER 11 |
| Paelopatides37073 | |
| Paelopatides37074 | |
| Paelopatides37075 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides37076 | |
| Paelopatides37077 |
