Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_032901-T1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
OS493_032902-T1 | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED |
OS493_032903-T1 | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED |
OS493_032904-T1 | HL01030P-RELATED |
OS493_032905-T1 | |
OS493_032906-T1 | SPONDIN |
OS493_032907-T1 | |
OS493_032908-T1 | SPONDIN |
OS493_032909-T1 | |
OS493_032910-T1 | |
OS493_032911-T1 | |
OS493_032912-T1 | |
OS493_032913-T1 | |
OS493_032914-T1 | |
OS493_032915-T1 | |
OS493_032916-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_032917-T1 | |
OS493_032918-T1 | |
OS493_032919-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_032920-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_032921-T1 | CONTACTIN 5 |
OS493_032922-T1 | BASIGIN RELATED |
OS493_032923-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_032924-T1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
OS493_032925-T1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
OS493_032926-T1 | |
OS493_032927-T1 | |
OS493_032928-T1 | |
OS493_032929-T1 | |
OS493_032930-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_032931-T1 | |
OS493_032932-T1 | |
OS493_032933-T1 | |
OS493_032935-T1 | |
OS493_032936-T1 | ARGININE OR CREATINE KINASE |
OS493_032937-T1 | TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE |
OS493_032938-T1 | |
OS493_032941-T1 | IONOTROPIC GLUTAMATE RECEPTOR |
OS493_032942-T1 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
OS493_032943-T1 | |
OS493_032944-T1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
OS493_032945-T1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
OS493_032946-T1 | |
OS493_032947-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_032948-T1 | |
OS493_032949-T1 | IONOTROPIC GLUTAMATE RECEPTOR |
OS493_032950-T1 | IONOTROPIC GLUTAMATE RECEPTOR |
OS493_032951-T1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI |
OS493_032952-T1 | |
OS493_032953-T1 | ACTIN |