About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_032901-T1SID1 TRANSMEMBRANE FAMILY MEMEBER
OS493_032902-T1NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED
OS493_032903-T1NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED
OS493_032904-T1HL01030P-RELATED
OS493_032905-T1
OS493_032906-T1SPONDIN
OS493_032907-T1
OS493_032908-T1SPONDIN
OS493_032909-T1
OS493_032910-T1
OS493_032911-T1
OS493_032912-T1
OS493_032913-T1
OS493_032914-T1
OS493_032915-T1
OS493_032916-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_032917-T1
OS493_032918-T1
OS493_032919-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_032920-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_032921-T1CONTACTIN 5
OS493_032922-T1BASIGIN RELATED
OS493_032923-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_032924-T1DEAD-BOX ATP-DEPENDENT RNA HELICASE 50
OS493_032925-T1DEAD-BOX ATP-DEPENDENT RNA HELICASE 50
OS493_032926-T1
OS493_032927-T1
OS493_032928-T1
OS493_032929-T1
OS493_032930-T1ATP-DEPENDENT RNA HELICASE
OS493_032931-T1
OS493_032932-T1
OS493_032933-T1
OS493_032935-T1
OS493_032936-T1ARGININE OR CREATINE KINASE
OS493_032937-T1TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
OS493_032938-T1
OS493_032941-T1IONOTROPIC GLUTAMATE RECEPTOR
OS493_032942-T1EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN
OS493_032943-T1
OS493_032944-T1CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
OS493_032945-T1CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
OS493_032946-T1
OS493_032947-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_032948-T1
OS493_032949-T1IONOTROPIC GLUTAMATE RECEPTOR
OS493_032950-T1IONOTROPIC GLUTAMATE RECEPTOR
OS493_032951-T1ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI
OS493_032952-T1
OS493_032953-T1ACTIN
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