Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_033006-T1 | RIBONUCLEASE |
OS493_033007-T1 | RIBONUCLEASE |
OS493_033010-T1 | |
OS493_033011-T1 | |
OS493_033012-T1 | |
OS493_033013-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_033016-T1 | CYTOKINE RECEPTOR |
OS493_033017-T1 | CYTOKINE RECEPTOR |
OS493_033018-T1 | |
OS493_033019-T1 | LITHOSTATHINE |
OS493_033020-T1 | LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL |
OS493_033021-T1 | |
OS493_033022-T1 | |
OS493_033023-T1 | CYTOKINE RECEPTOR |
OS493_033024-T1 | PROTEIN SIDEKICK |
OS493_033025-T1 | CYTOKINE RECEPTOR |
OS493_033026-T1 | UNCHARACTERIZED |
OS493_033027-T1 | |
OS493_033028-T1 | |
OS493_033029-T1 | |
OS493_033030-T1 | FTP DOMAIN-CONTAINING PROTEIN |
OS493_033031-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
OS493_033032-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
OS493_033033-T1 | |
OS493_033034-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_033035-T1 | |
OS493_033036-T1 | |
OS493_033037-T1 | |
OS493_033038-T1 | FTP DOMAIN-CONTAINING PROTEIN |
OS493_033039-T1 | |
OS493_033040-T1 | |
OS493_033041-T1 | |
OS493_033042-T1 | CYTOKINE RECEPTOR |
OS493_033043-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_033045-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
OS493_033046-T1 | GLYCOPROTEIN HORMONE RECEPTOR |
OS493_033047-T1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER |
OS493_033048-T1 | AP COMPLEX SUBUNIT MU |
OS493_033049-T1 | |
OS493_033050-T1 | |
OS493_033051-T1 | |
OS493_033052-T1 | |
OS493_033053-T1 | ZINC FINGER-CONTAINING PROTEIN P48ZNF |
OS493_033054-T1 | |
OS493_033055-T1 | |
OS493_033056-T1 | GLYCOPROTEIN HORMONE RECEPTOR |
OS493_033057-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
OS493_033058-T1 | COP9 SIGNALOSOME COMPLEX SUBUNIT 8 |
OS493_033059-T1 | PEROXIREDOXIN |
OS493_033060-T1 | PROTEIN CBG20567 |