About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

<< First 602 603 604 605 606 607 608 609 610 611 Forward> Last>>        1875 pages in total

Gene IDDescription
OS493_013079-T1-
OS493_013080-T1FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
OS493_013081-T1-
OS493_013082-T1DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5
OS493_013083-T1-
OS493_013084-T1HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE
OS493_013085-T1HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE
OS493_013086-T1TETHER CONTAINING UBX DOMAIN FOR GLUT4
OS493_013087-T1AXIN
OS493_013088-T1AXIN
OS493_013089-T1AXIN
OS493_013090-T1FROUNT PROTEIN-RELATED
OS493_013091-T1FROUNT PROTEIN-RELATED
OS493_013092-T1SNF2/RAD54 FAMILY MEMBER
OS493_013093-T1-
OS493_013094-T1-
OS493_013096-T1METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN
OS493_013098-T1-
OS493_013099-T1-
OS493_013100-T1DEATH DOMAIN-CONTAINING PROTEIN CRADD
TOP