About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_032851-T140S RIBOSOMAL PROTEIN S3A
OS493_032852-T1SERINE-THREONINE PROTEIN KINASE
OS493_032853-T1
OS493_032854-T1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
OS493_032855-T1
OS493_032856-T1TRAF-TYPE ZINC FINGER PROTEIN-RELATED
OS493_032857-T1
OS493_032858-T1
OS493_032859-T1CODANIN-1
OS493_032860-T1CODANIN-1
OS493_032861-T1BIOTINIDASE-RELATED
OS493_032862-T1CODANIN-1
OS493_032863-T1APOPTOSIS REGULATORY PROTEIN SIVA
OS493_032864-T1
OS493_032865-T1
OS493_032866-T1
OS493_032867-T1CYTOCHROME P450 FAMILY 46 SUBFAMILY A
OS493_032868-T1
OS493_032869-T1
OS493_032870-T1
OS493_032871-T1
OS493_032872-T1
OS493_032873-T1
OS493_032874-T1BEIGE/BEACH-RELATED
OS493_032875-T1BEIGE/BEACH-RELATED
OS493_032876-T1BEIGE/BEACH-RELATED
OS493_032877-T1BEIGE/BEACH-RELATED
OS493_032878-T1
OS493_032879-T1
OS493_032880-T1
OS493_032881-T1
OS493_032882-T1
OS493_032883-T1
OS493_032884-T1
OS493_032885-T1
OS493_032886-T1
OS493_032887-T1
OS493_032888-T1
OS493_032889-T1
OS493_032890-T1
OS493_032891-T1
OS493_032892-T1INTELECTIN
OS493_032893-T1MATRIN 3/NUCLEAR PROTEIN 220-RELATED
OS493_032894-T1MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1
OS493_032895-T1
OS493_032896-T1MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1
OS493_032897-T1MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1
OS493_032898-T1TRNA METHYLTRANSFERASE
OS493_032899-T1BRISC AND BRCA1-A COMPLEX MEMBER 2
OS493_032900-T1BRISC AND BRCA1-A COMPLEX MEMBER 2
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