Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_032531-T1 | |
OS493_032532-T1 | |
OS493_032533-T1 | NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED |
OS493_032534-T1 | |
OS493_032536-T1 | SORTILIN RELATED |
OS493_032537-T1 | SORTILIN RELATED |
OS493_032538-T1 | BRCA2 AND CDKN1A INTERACTING PROTEIN |
OS493_032539-T1 | CDK2-ASSOCIATED AND CULLIN DOMAIN-CONTAINING PROTEIN 1 |
OS493_032541-T1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
OS493_032542-T1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
OS493_032543-T1 | |
OS493_032544-T1 | |
OS493_032545-T1 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
OS493_032546-T1 | UNCHARACTERIZED |
OS493_032547-T1 | UNCHARACTERIZED |
OS493_032548-T1 | UNCHARACTERIZED |
OS493_032549-T1 | |
OS493_032550-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_032551-T1 | |
OS493_032552-T1 | UNCHARACTERIZED |
OS493_032553-T1 | UNCHARACTERIZED |
OS493_032554-T1 | UNCHARACTERIZED |
OS493_032555-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_032556-T1 | BCDNA.GH03377 |
OS493_032557-T1 | NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED |
OS493_032558-T1 | CONTACTIN 5 |
OS493_032559-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_032560-T1 | |
OS493_032561-T1 | |
OS493_032562-T1 | |
OS493_032563-T1 | HOMEOBOX PROTEIN EMX-RELATED |
OS493_032564-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_032566-T1 | INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE |
OS493_032567-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 99 |
OS493_032568-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_032569-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_032570-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_032571-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_032572-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_032573-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_032574-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_032575-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_032576-T1 | PROMININ PROM PROTEIN |
OS493_032577-T1 | PROMININ PROM PROTEIN |
OS493_032578-T1 | PROMININ PROM PROTEIN |
OS493_032579-T1 | METAXIN RELATED |
OS493_032582-T1 | |
OS493_032584-T1 | |
OS493_032585-T1 | UNCHARACTERIZED |
OS493_032586-T1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |