About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_032259-T1
OS493_032260-T1
OS493_032261-T1
OS493_032262-T1
OS493_032263-T1
OS493_032264-T1
OS493_032265-T1NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1
OS493_032266-T1
OS493_032267-T1ACIREDUCTONE DIOXYGENASE
OS493_032268-T1
OS493_032269-T1
OS493_032270-T1
OS493_032271-T1
OS493_032272-T1
OS493_032273-T1
OS493_032274-T1PHOSPHOFRUCTOKINASE
OS493_032275-T1PHOSPHOFRUCTOKINASE
OS493_032276-T1PHOSPHOFRUCTOKINASE
OS493_032277-T1MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
OS493_032278-T1
OS493_032279-T1
OS493_032280-T1
OS493_032283-T1
OS493_032286-T1
OS493_032287-T1
OS493_032288-T1MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
OS493_032289-T1MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
OS493_032290-T1
OS493_032291-T1MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
OS493_032292-T1
OS493_032293-T1L-GULONOLACTONE OXIDASE
OS493_032294-T1L-GULONOLACTONE OXIDASE
OS493_032295-T1
OS493_032296-T1
OS493_032297-T1
OS493_032298-T1
OS493_032299-T1
OS493_032300-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_032301-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_032302-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_032303-T1
OS493_032304-T1
OS493_032305-T1CHONDROITIN SYNTHASE
OS493_032306-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
OS493_032307-T1CHONDROITIN SYNTHASE
OS493_032308-T1
OS493_032309-T1BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1
OS493_032310-T1
OS493_032311-T1BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1
OS493_032312-T1SERINE-THREONINE PROTEIN KINASE
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