About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_032147-T1
OS493_032148-T1ARYLSULFATASE
OS493_032150-T1
OS493_032151-T1O-ACYLTRANSFERASE
OS493_032152-T1O-ACYLTRANSFERASE
OS493_032153-T1OPSIN
OS493_032154-T1
OS493_032155-T1CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10
OS493_032156-T1
OS493_032157-T1
OS493_032158-T1ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6
OS493_032159-T1
OS493_032160-T1
OS493_032161-T1COLLAGEN ALPHA
OS493_032163-T1
OS493_032164-T1
OS493_032165-T1
OS493_032166-T1ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6
OS493_032167-T1
OS493_032168-T1
OS493_032169-T1CHITINASE
OS493_032170-T1CHITINASE
OS493_032171-T1COATOMER SUBUNIT EPSILON
OS493_032172-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
OS493_032173-T1POLYGALACTURONASE INHIBITOR 1
OS493_032174-T1LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1
OS493_032175-T1
OS493_032176-T1RECEPTOR-LIKE PROTEIN 55
OS493_032177-T1POLYGALACTURONASE INHIBITOR 1
OS493_032179-T1VITELLOGENIN-RELATED
OS493_032181-T1
OS493_032182-T1POLY A POLYMERASE CID PAP -RELATED
OS493_032183-T1
OS493_032184-T1ALKALINE CERAMIDASE
OS493_032185-T1ALKALINE CERAMIDASE
OS493_032186-T1
OS493_032187-T1
OS493_032188-T1OS10G0105400 PROTEIN
OS493_032189-T1OS10G0105400 PROTEIN
OS493_032190-T1OS10G0105400 PROTEIN
OS493_032191-T1OS10G0105400 PROTEIN
OS493_032193-T1
OS493_032194-T1OS10G0105400 PROTEIN
OS493_032195-T1
OS493_032196-T1OS10G0105400 PROTEIN
OS493_032197-T1OS10G0105400 PROTEIN
OS493_032198-T1OS10G0105400 PROTEIN
OS493_032199-T1MICROSOMAL TRIGLYCERIDE TRANSFER PROTEIN, LARGE SUBUNIT
OS493_032200-T1
OS493_032201-T1
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