Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_032043-T1 | |
OS493_032044-T1 | 60S RIBOSOMAL PROTEIN L34 |
OS493_032045-T1 | |
OS493_032046-T1 | |
OS493_032047-T1 | |
OS493_032048-T1 | ORGANIC ANION TRANSPORTER |
OS493_032050-T1 | MATERNAL EFFECT PROTEIN STAUFEN |
OS493_032051-T1 | MATERNAL EFFECT PROTEIN STAUFEN |
OS493_032052-T1 | ABHYDROLASE DOMAIN-CONTAINING PROTEIN |
OS493_032053-T1 | VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED |
OS493_032054-T1 | TRANSCRIPTION FACTOR 7 FAMILY MEMBER |
OS493_032055-T1 | - |
OS493_032056-T1 | SKP1 |
OS493_032057-T1 | TRANSCRIPTION FACTOR MAF |
OS493_032058-T1 | PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED |
OS493_032059-T1 | 14-3-3 PROTEIN |
OS493_032060-T1 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
OS493_032061-T1 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
OS493_032062-T1 | |
OS493_032063-T1 | CYTOSOLIC CARBOXYPEPTIDASE |
OS493_032064-T1 | |
OS493_032065-T1 | PROTEIN LKAAEAR1 |
OS493_032066-T1 | U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN |
OS493_032067-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_032068-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_032069-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_032070-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_032071-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_032072-T1 | |
OS493_032073-T1 | |
OS493_032074-T1 | |
OS493_032075-T1 | |
OS493_032076-T1 | BASIGIN RELATED |
OS493_032077-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_032078-T1 | |
OS493_032079-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_032080-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_032081-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_032082-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_032083-T1 | |
OS493_032084-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_032085-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_032086-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_032088-T1 | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED |
OS493_032089-T1 | |
OS493_032090-T1 | FTP DOMAIN-CONTAINING PROTEIN |
OS493_032091-T1 | |
OS493_032092-T1 | PROPERDIN |
OS493_032093-T1 | NOTCH LIGAND FAMILY MEMBER |
OS493_032094-T1 |