About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_012685-T1RAGULATOR COMPLEX PROTEIN LAMTOR4
OS493_012686-T1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
OS493_012688-T126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2
OS493_012689-T1-
OS493_012690-T1E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
OS493_012691-T1E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
OS493_012692-T1BONUS, ISOFORM C-RELATED
OS493_012694-T1E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
OS493_012695-T1GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE
OS493_012696-T1-
OS493_012697-T1UBIQUITIN-PROTEIN LIGASE E3C
OS493_012698-T1L-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL
OS493_012699-T1GUANINE NUCLEOTIDE EXCHANGE FACTOR
OS493_012700-T1RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED
OS493_012701-T1VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED
OS493_012702-T1EG:114D9.1 PROTEIN-RELATED
OS493_012703-T1ARGINASE
OS493_012704-T1EXOSOME COMPLEX COMPONENT
OS493_012705-T1EXOSOME COMPLEX COMPONENT
OS493_012706-T12-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL
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