About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_012665-T1XANTHINE DEHYDROGENASE
OS493_012666-T1XANTHINE DEHYDROGENASE
OS493_012667-T1XANTHINE DEHYDROGENASE
OS493_012668-T1CCAAT/ENHANCER BINDING PROTEIN
OS493_012669-T1CXYORF1
OS493_012670-T1UNCHARACTERIZED
OS493_012671-T1METHIONINE SYNTHASE
OS493_012672-T1METHIONINE SYNTHASE
OS493_012673-T1METHIONINE SYNTHASE
OS493_012674-T1-
OS493_012675-T1XANTHINE DEHYDROGENASE
OS493_012676-T1SULFOQUINOVOSYL TRANSFERASE SQD2
OS493_012677-T1TYROSINE-PROTEIN KINASE HOPSCOTCH
OS493_012678-T1TYROSINE-PROTEIN KINASE
OS493_012679-T1-
OS493_012680-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_012681-T1TESTIS DEVELOPMENT PROTEIN PRTD
OS493_012682-T1SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1
OS493_012683-T1RADIAL SPOKEHEAD-RELATED
OS493_012684-T1ATP-DEPENDENT RNA HELICASE DBP3
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