About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_031658-T1CASPASE
OS493_031659-T1TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
OS493_031660-T1LEUCOKININ RECEPTOR-RELATED
OS493_031661-T1CADHERIN-23
OS493_031662-T1FAT ATYPICAL CADHERIN-RELATED
OS493_031663-T1BILE ACID BETA-GLUCOSIDASE-RELATED
OS493_031664-T1BILE ACID BETA-GLUCOSIDASE-RELATED
OS493_031665-T1CADHERIN-23
OS493_031666-T1CADHERIN-23
OS493_031667-T1BILE ACID BETA-GLUCOSIDASE-RELATED
OS493_031668-T1
OS493_031669-T1
OS493_031670-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
OS493_031671-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
OS493_031672-T1BILE ACID BETA-GLUCOSIDASE-RELATED
OS493_031673-T1HIKESHI FAMILY MEMBER
OS493_031674-T1PENTRAXIN
OS493_031675-T1METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
OS493_031676-T1
OS493_031677-T1COLLAGEN ALPHA
OS493_031678-T1
OS493_031679-T1LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
OS493_031680-T1
OS493_031681-T1
OS493_031682-T1
OS493_031683-T1
OS493_031684-T1
OS493_031685-T1
OS493_031686-T1
OS493_031688-T1
OS493_031689-T1
OS493_031690-T1
OS493_031691-T1
OS493_031692-T1
OS493_031693-T1ALPHA KINASE/ELONGATION FACTOR 2 KINASE
OS493_031694-T1CARNITINE O-ACYLTRANSFERASE
OS493_031695-T1MITOCHONDRIA-EATING PROTEIN-RELATED
OS493_031696-T1ALPHA KINASE/ELONGATION FACTOR 2 KINASE
OS493_031697-T1
OS493_031698-T1CARNITINE O-ACYLTRANSFERASE
OS493_031699-T1
OS493_031700-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
OS493_031701-T1
OS493_031702-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
OS493_031703-T1
OS493_031704-T1
OS493_031705-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
OS493_031706-T1
OS493_031707-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
OS493_031708-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
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