About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_031327-T1RHO GTPASE-ACTIVATING PROTEIN 190
OS493_031328-T1RHO GTPASE-ACTIVATING PROTEIN 190
OS493_031329-T1RHO GTPASE-ACTIVATING PROTEIN 190
OS493_031330-T1RHO GTPASE-ACTIVATING PROTEIN 190
OS493_031331-T1
OS493_031332-T1
OS493_031333-T1
OS493_031334-T1
OS493_031335-T1
OS493_031336-T1
OS493_031337-T1
OS493_031338-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_031339-T1
OS493_031340-T1BLR0577 PROTEIN
OS493_031341-T1RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS
OS493_031342-T1TPR REPEAT-CONTAINING PROTEIN PA4667
OS493_031343-T1
OS493_031344-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
OS493_031345-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
OS493_031346-T1UNCHARACTERIZED
OS493_031347-T1UNCHARACTERIZED
OS493_031348-T1KELCH PROTEIN
OS493_031349-T1RH59310P
OS493_031350-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_031351-T1CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
OS493_031352-T1SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
OS493_031353-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_031354-T1
OS493_031357-T1ACYL-COA DEHYDROGENASE
OS493_031358-T1
OS493_031360-T1ACYL-COA DEHYDROGENASE
OS493_031361-T1ACYL-COA DEHYDROGENASE
OS493_031362-T1
OS493_031364-T1ACYL-COA DEHYDROGENASE
OS493_031365-T1CDC45-RELATED PROTEIN
OS493_031366-T1LIM DOMAIN-CONTAINING PROTEIN
OS493_031367-T1GLYCOLIPID TRANSFER PROTEIN-RELATED
OS493_031368-T1
OS493_031369-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_031370-T1
OS493_031371-T1ACYL-COA DEHYDROGENASE
OS493_031374-T1SERINE/THREONINE-PROTEIN KINASE
OS493_031375-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_031376-T1
OS493_031377-T1HEAT SHOCK PROTEIN 90 FAMILY MEMBER
OS493_031378-T1RNA POLYMERASE II-ASSOCIATED PROTEIN 1
OS493_031381-T1COFILIN-RELATED
OS493_031382-T1PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H
OS493_031383-T1SESQUIPEDALIAN
OS493_031384-T1UBIQUITIN-ACTIVATING ENZYME E1
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