Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_031327-T1 | RHO GTPASE-ACTIVATING PROTEIN 190 |
OS493_031328-T1 | RHO GTPASE-ACTIVATING PROTEIN 190 |
OS493_031329-T1 | RHO GTPASE-ACTIVATING PROTEIN 190 |
OS493_031330-T1 | RHO GTPASE-ACTIVATING PROTEIN 190 |
OS493_031331-T1 | |
OS493_031332-T1 | |
OS493_031333-T1 | |
OS493_031334-T1 | |
OS493_031335-T1 | |
OS493_031336-T1 | |
OS493_031337-T1 | |
OS493_031338-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_031339-T1 | |
OS493_031340-T1 | BLR0577 PROTEIN |
OS493_031341-T1 | RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS |
OS493_031342-T1 | TPR REPEAT-CONTAINING PROTEIN PA4667 |
OS493_031343-T1 | |
OS493_031344-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
OS493_031345-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
OS493_031346-T1 | UNCHARACTERIZED |
OS493_031347-T1 | UNCHARACTERIZED |
OS493_031348-T1 | KELCH PROTEIN |
OS493_031349-T1 | RH59310P |
OS493_031350-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_031351-T1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
OS493_031352-T1 | SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 |
OS493_031353-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_031354-T1 | |
OS493_031357-T1 | ACYL-COA DEHYDROGENASE |
OS493_031358-T1 | |
OS493_031360-T1 | ACYL-COA DEHYDROGENASE |
OS493_031361-T1 | ACYL-COA DEHYDROGENASE |
OS493_031362-T1 | |
OS493_031364-T1 | ACYL-COA DEHYDROGENASE |
OS493_031365-T1 | CDC45-RELATED PROTEIN |
OS493_031366-T1 | LIM DOMAIN-CONTAINING PROTEIN |
OS493_031367-T1 | GLYCOLIPID TRANSFER PROTEIN-RELATED |
OS493_031368-T1 | |
OS493_031369-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
OS493_031370-T1 | |
OS493_031371-T1 | ACYL-COA DEHYDROGENASE |
OS493_031374-T1 | SERINE/THREONINE-PROTEIN KINASE |
OS493_031375-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_031376-T1 | |
OS493_031377-T1 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER |
OS493_031378-T1 | RNA POLYMERASE II-ASSOCIATED PROTEIN 1 |
OS493_031381-T1 | COFILIN-RELATED |
OS493_031382-T1 | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H |
OS493_031383-T1 | SESQUIPEDALIAN |
OS493_031384-T1 | UBIQUITIN-ACTIVATING ENZYME E1 |