About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_031274-T1
OS493_031275-T1FRIZZLED
OS493_031276-T1
OS493_031277-T1FRIZZLED
OS493_031278-T1FRIZZLED
OS493_031279-T1
OS493_031280-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
OS493_031281-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
OS493_031282-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
OS493_031283-T1ZGC:172121
OS493_031284-T1NUCLEOSIDE DIPHOSPHATE KINASE 7
OS493_031285-T1PROFILIN
OS493_031286-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_031287-T1GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2
OS493_031288-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_031289-T1TRANSCRIPTIONAL ADAPTER 3-RELATED
OS493_031290-T1REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
OS493_031291-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_031293-T1RAS GTPASE-ACTIVATING PROTEINS
OS493_031294-T1RAS GTPASE-ACTIVATING PROTEINS
OS493_031295-T1CONTACTIN 5
OS493_031296-T1
OS493_031297-T1DDB1- AND CUL4-ASSOCIATED FACTOR 15
OS493_031298-T1DDB1- AND CUL4-ASSOCIATED FACTOR 15
OS493_031300-T1TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8
OS493_031301-T1MULTICOPPER OXIDASE-RELATED
OS493_031302-T1MULTICOPPER OXIDASE-RELATED
OS493_031303-T1ENOLASE (DUF1399)
OS493_031304-T1PERSULFIDE DIOXYGENASE ETHE1
OS493_031305-T1TECTONIC FAMILY MEMBER
OS493_031306-T1
OS493_031307-T1
OS493_031308-T1INACTIVE HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 1
OS493_031309-T1
OS493_031310-T1
OS493_031311-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_031312-T1
OS493_031313-T1
OS493_031314-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_031316-T1
OS493_031317-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_031318-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_031319-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_031320-T1
OS493_031321-T1
OS493_031322-T1
OS493_031323-T1
OS493_031324-T1RAS-RELATED PROTEIN RAB
OS493_031325-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_031326-T1ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
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