Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_031274-T1 | |
OS493_031275-T1 | FRIZZLED |
OS493_031276-T1 | |
OS493_031277-T1 | FRIZZLED |
OS493_031278-T1 | FRIZZLED |
OS493_031279-T1 | |
OS493_031280-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
OS493_031281-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
OS493_031282-T1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
OS493_031283-T1 | ZGC:172121 |
OS493_031284-T1 | NUCLEOSIDE DIPHOSPHATE KINASE 7 |
OS493_031285-T1 | PROFILIN |
OS493_031286-T1 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
OS493_031287-T1 | GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 |
OS493_031288-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
OS493_031289-T1 | TRANSCRIPTIONAL ADAPTER 3-RELATED |
OS493_031290-T1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
OS493_031291-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_031293-T1 | RAS GTPASE-ACTIVATING PROTEINS |
OS493_031294-T1 | RAS GTPASE-ACTIVATING PROTEINS |
OS493_031295-T1 | CONTACTIN 5 |
OS493_031296-T1 | |
OS493_031297-T1 | DDB1- AND CUL4-ASSOCIATED FACTOR 15 |
OS493_031298-T1 | DDB1- AND CUL4-ASSOCIATED FACTOR 15 |
OS493_031300-T1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 |
OS493_031301-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_031302-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_031303-T1 | ENOLASE (DUF1399) |
OS493_031304-T1 | PERSULFIDE DIOXYGENASE ETHE1 |
OS493_031305-T1 | TECTONIC FAMILY MEMBER |
OS493_031306-T1 | |
OS493_031307-T1 | |
OS493_031308-T1 | INACTIVE HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 1 |
OS493_031309-T1 | |
OS493_031310-T1 | |
OS493_031311-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_031312-T1 | |
OS493_031313-T1 | |
OS493_031314-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_031316-T1 | |
OS493_031317-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_031318-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_031319-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_031320-T1 | |
OS493_031321-T1 | |
OS493_031322-T1 | |
OS493_031323-T1 | |
OS493_031324-T1 | RAS-RELATED PROTEIN RAB |
OS493_031325-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
OS493_031326-T1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |