About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_031170-T1METHYLTRANSFERASE
OS493_031171-T1METHYLTRANSFERASE
OS493_031172-T1METHYLTRANSFERASE
OS493_031173-T1
OS493_031174-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_031175-T1
OS493_031176-T1
OS493_031177-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_031178-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_031179-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_031180-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_031181-T1
OS493_031182-T1
OS493_031183-T1
OS493_031184-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_031185-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_031186-T1HISTONE ACETYLTRANSFERASE COMPLEX
OS493_031187-T1OPSIN
OS493_031188-T1
OS493_031189-T1
OS493_031190-T1E3 UBIQUITIN-PROTEIN LIGASE HECTD3
OS493_031191-T1E3 UBIQUITIN-PROTEIN LIGASE HECTD3
OS493_031192-T1-
OS493_031193-T1-
OS493_031194-T1SPERMATOGENESIS-ASSOCIATED PROTEIN 1
OS493_031195-T1SPERMATOGENESIS-ASSOCIATED PROTEIN 1
OS493_031196-T1LD33695P
OS493_031197-T1TYROSINE-PROTEIN KINASE
OS493_031198-T1CYSTEINE AND GLYCINE-RICH PROTEIN 2 BINDING PROTEIN
OS493_031199-T1SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
OS493_031200-T1
OS493_031201-T1
OS493_031202-T1
OS493_031203-T1
OS493_031204-T1
OS493_031205-T1
OS493_031206-T1
OS493_031207-T1
OS493_031208-T1
OS493_031209-T1
OS493_031210-T1
OS493_031211-T1
OS493_031212-T1
OS493_031213-T1
OS493_031214-T1
OS493_031215-T1
OS493_031216-T1
OS493_031217-T1
OS493_031218-T1
OS493_031219-T1
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