About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_031220-T1AIG1-TYPE G DOMAIN-CONTAINING PROTEIN
OS493_031224-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 39
OS493_031225-T1
OS493_031226-T1ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY
OS493_031227-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 21
OS493_031228-T1MIP11318P
OS493_031229-T1KRAB AND ZINC FINGER DOMAIN-CONTAINING
OS493_031230-T1
OS493_031231-T1PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED
OS493_031232-T1PROTEIN SIDEKICK
OS493_031233-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_031234-T1
OS493_031235-T1
OS493_031236-T1
OS493_031237-T1
OS493_031238-T1
OS493_031239-T1
OS493_031240-T1
OS493_031241-T1
OS493_031242-T1
OS493_031243-T1
OS493_031244-T1IMPORTIN BETA
OS493_031245-T1IMPORTIN BETA
OS493_031246-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_031247-T1DIACYLGLYCEROL O-ACYLTRANSFERASE
OS493_031248-T1DIACYLGLYCEROL O-ACYLTRANSFERASE
OS493_031249-T1DIACYLGLYCEROL O-ACYLTRANSFERASE
OS493_031250-T1DIACYLGLYCEROL O-ACYLTRANSFERASE
OS493_031251-T1LSM1
OS493_031252-T1LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
OS493_031253-T1PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED
OS493_031254-T1CENTROMERE PROTEIN I
OS493_031255-T1POTASSIUM/PROTON ANTIPORTER-RELATED
OS493_031256-T1TSC22 DOMAIN FAMILY PROTEIN 1
OS493_031257-T1RAS-RELATED PROTEIN RAB
OS493_031258-T1ZGC:153352
OS493_031259-T1STEROL ISOMERASE
OS493_031260-T1CALCIUM-BINDING PROTEIN 39-RELATED
OS493_031261-T1FRIZZLED
OS493_031262-T1FRIZZLED
OS493_031263-T1
OS493_031264-T1
OS493_031265-T1RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED
OS493_031267-T1MULTICOPPER OXIDASE-RELATED
OS493_031268-T1MULTICOPPER OXIDASE-RELATED
OS493_031269-T1MULTICOPPER OXIDASE-RELATED
OS493_031270-T1MULTICOPPER OXIDASE-RELATED
OS493_031271-T1FRIZZLED
OS493_031272-T1FRIZZLED
OS493_031273-T1
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