Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_031046-T1 | |
OS493_031047-T1 | |
OS493_031048-T1 | |
OS493_031049-T1 | |
OS493_031050-T1 | |
OS493_031051-T1 | |
OS493_031052-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_031053-T1 | PROLYL ENDOPEPTIDASE |
OS493_031054-T1 | TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER |
OS493_031055-T1 | |
OS493_031056-T1 | |
OS493_031057-T1 | |
OS493_031058-T1 | BASIGIN RELATED |
OS493_031059-T1 | NEURON-DERIVED NEUROTROPHIC FACTOR |
OS493_031060-T1 | COLLAGEN ALPHA |
OS493_031061-T1 | SI:CH211-266K2.1 |
OS493_031062-T1 | |
OS493_031063-T1 | |
OS493_031065-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
OS493_031066-T1 | VWFC DOMAIN-CONTAINING PROTEIN |
OS493_031067-T1 | |
OS493_031070-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12 |
OS493_031071-T1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
OS493_031072-T1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
OS493_031073-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
OS493_031074-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_031075-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
OS493_031076-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_031077-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_031078-T1 | SODIUM/CALCIUM EXCHANGER |
OS493_031079-T1 | |
OS493_031080-T1 | SODIUM/CALCIUM EXCHANGER |
OS493_031081-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_031083-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_031084-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_031085-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_031086-T1 | |
OS493_031087-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_031088-T1 | POLYCYSTIN-1 |
OS493_031089-T1 | |
OS493_031091-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
OS493_031092-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12 |
OS493_031094-T1 | |
OS493_031095-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
OS493_031096-T1 | |
OS493_031097-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
OS493_031098-T1 | |
OS493_031099-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
OS493_031100-T1 | |
OS493_031101-T1 |