About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_031102-T1LEUCINE RICH REPEAT FAMILY PROTEIN
OS493_031104-T1LEUCINE RICH REPEAT FAMILY PROTEIN
OS493_031106-T1
OS493_031107-T1BASIGIN RELATED
OS493_031108-T1
OS493_031109-T1
OS493_031110-T1
OS493_031111-T1SUGAR KINASE
OS493_031113-T1LYSINE-SPECIFIC DEMETHYLASE
OS493_031114-T1LYSINE-SPECIFIC DEMETHYLASE
OS493_031116-T1INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
OS493_031117-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_031118-T1SLEI FAMILY PROTEIN
OS493_031119-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_031120-T1PEPTIDASE S49
OS493_031121-T1
OS493_031122-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_031123-T1CONTACTIN 5
OS493_031125-T1CONTACTIN 5
OS493_031126-T1
OS493_031127-T1ZGC:195170
OS493_031128-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_031130-T1
OS493_031131-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_031132-T1VASCULAR CELL ADHESION MOLECULE 1
OS493_031133-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_031134-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_031135-T1
OS493_031137-T1NEPHRIN
OS493_031138-T1NEPHRIN
OS493_031140-T1
OS493_031141-T1
OS493_031142-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_031143-T1CONTACTIN 5
OS493_031144-T1
OS493_031145-T1
OS493_031146-T1
OS493_031147-T1
OS493_031148-T1
OS493_031151-T1
OS493_031152-T1CONTACTIN 5
OS493_031153-T1
OS493_031154-T1
OS493_031156-T1
OS493_031157-T1
OS493_031158-T1
OS493_031159-T1EXPRESSED PROTEIN
OS493_031160-T1BASIGIN RELATED
OS493_031163-T1BASIGIN RELATED
OS493_031168-T1
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