Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_031604-T1 | HYALURONIDASE |
OS493_031605-T1 | OPSIN |
OS493_031606-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_031607-T1 | DNA HELICASE RECQ FAMILY MEMBER |
OS493_031608-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_031609-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_031610-T1 | SERINE/THREONINE-PROTEIN KINASE FRAY2 |
OS493_031611-T1 | |
OS493_031612-T1 | MYOTROPHIN |
OS493_031613-T1 | |
OS493_031614-T1 | |
OS493_031615-T1 | |
OS493_031616-T1 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 |
OS493_031617-T1 | |
OS493_031619-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_031620-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_031621-T1 | |
OS493_031622-T1 | |
OS493_031623-T1 | E3 UBIQUITIN-PROTEIN LIGASE COP1 |
OS493_031624-T1 | TRANSCRIPTION INITIATION FACTOR TFIID |
OS493_031625-T1 | PHOSPHATIDYLINOSITOL KINASE |
OS493_031626-T1 | PHOSPHATIDYLINOSITOL KINASE |
OS493_031627-T1 | |
OS493_031628-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_031631-T1 | |
OS493_031632-T1 | |
OS493_031633-T1 | |
OS493_031634-T1 | |
OS493_031635-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_031636-T1 | FTP DOMAIN-CONTAINING PROTEIN |
OS493_031637-T1 | |
OS493_031638-T1 | HEAT SHOCK PROTEIN 70KDA |
OS493_031639-T1 | |
OS493_031640-T1 | E3 UBIQUITIN-PROTEIN LIGASE COP1 |
OS493_031641-T1 | |
OS493_031642-T1 | GLR0591 PROTEIN |
OS493_031643-T1 | |
OS493_031644-T1 | ACROSIN-RELATED |
OS493_031645-T1 | TRYPSIN-RELATED |
OS493_031647-T1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_031648-T1 | |
OS493_031649-T1 | |
OS493_031650-T1 | |
OS493_031651-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
OS493_031652-T1 | UNCHARACTERIZED FAM3 |
OS493_031653-T1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
OS493_031654-T1 | NACHT DOMAIN-CONTAINING PROTEIN |
OS493_031655-T1 | |
OS493_031656-T1 | NACHT DOMAIN-CONTAINING PROTEIN |
OS493_031657-T1 | CASPASE |