About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_031604-T1HYALURONIDASE
OS493_031605-T1OPSIN
OS493_031606-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_031607-T1DNA HELICASE RECQ FAMILY MEMBER
OS493_031608-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_031609-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_031610-T1SERINE/THREONINE-PROTEIN KINASE FRAY2
OS493_031611-T1
OS493_031612-T1MYOTROPHIN
OS493_031613-T1
OS493_031614-T1
OS493_031615-T1
OS493_031616-T1RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
OS493_031617-T1
OS493_031619-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_031620-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_031621-T1
OS493_031622-T1
OS493_031623-T1E3 UBIQUITIN-PROTEIN LIGASE COP1
OS493_031624-T1TRANSCRIPTION INITIATION FACTOR TFIID
OS493_031625-T1PHOSPHATIDYLINOSITOL KINASE
OS493_031626-T1PHOSPHATIDYLINOSITOL KINASE
OS493_031627-T1
OS493_031628-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_031631-T1
OS493_031632-T1
OS493_031633-T1
OS493_031634-T1
OS493_031635-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_031636-T1FTP DOMAIN-CONTAINING PROTEIN
OS493_031637-T1
OS493_031638-T1HEAT SHOCK PROTEIN 70KDA
OS493_031639-T1
OS493_031640-T1E3 UBIQUITIN-PROTEIN LIGASE COP1
OS493_031641-T1
OS493_031642-T1GLR0591 PROTEIN
OS493_031643-T1
OS493_031644-T1ACROSIN-RELATED
OS493_031645-T1TRYPSIN-RELATED
OS493_031647-T1ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
OS493_031648-T1
OS493_031649-T1
OS493_031650-T1
OS493_031651-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
OS493_031652-T1UNCHARACTERIZED FAM3
OS493_031653-T1PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
OS493_031654-T1NACHT DOMAIN-CONTAINING PROTEIN
OS493_031655-T1
OS493_031656-T1NACHT DOMAIN-CONTAINING PROTEIN
OS493_031657-T1CASPASE
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