About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_031549-T1
OS493_031550-T1
OS493_031551-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_031552-T1
OS493_031553-T1
OS493_031554-T1
OS493_031555-T1
OS493_031556-T1
OS493_031557-T1SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC
OS493_031558-T1
OS493_031559-T1FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I
OS493_031560-T1FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I
OS493_031561-T1BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE
OS493_031562-T1
OS493_031563-T1MONOCARBOXYLATE TRANSPORTER
OS493_031564-T1MONOCARBOXYLATE TRANSPORTER
OS493_031565-T1SI:DKEY-29D5.2
OS493_031566-T1
OS493_031567-T1
OS493_031568-T1BONE MARROW PROTEOGLYCAN
OS493_031569-T1
OS493_031570-T1BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1
OS493_031575-T1
OS493_031577-T1S -2-HYDROXY-ACID OXIDASE-RELATED
OS493_031578-T1LP10445P
OS493_031579-T1PECANEX
OS493_031580-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_031581-T1PECANEX
OS493_031582-T1
OS493_031583-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_031584-T1PECANEX
OS493_031585-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_031586-T1PECANEX
OS493_031587-T1
OS493_031588-T1
OS493_031589-T1
OS493_031590-T1
OS493_031591-T1EXPRESSED PROTEIN
OS493_031592-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_031593-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_031594-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_031595-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_031596-T1B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
OS493_031597-T1
OS493_031598-T1GRANULIN
OS493_031599-T1GRANULIN
OS493_031600-T1GRANULIN
OS493_031601-T1
OS493_031602-T1DEPHOSPHO-COA KINASE-RELATED
OS493_031603-T1DEPHOSPHO-COA KINASE-RELATED
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