Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_031817-T1 | COLLAGEN ALPHA |
OS493_031818-T1 | COLLAGEN ALPHA |
OS493_031819-T1 | E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER |
OS493_031820-T1 | WD40 REPEAT PF20 |
OS493_031821-T1 | PROTEIN TORNADO 1 |
OS493_031822-T1 | - |
OS493_031823-T1 | |
OS493_031824-T1 | DEATH DOMAIN-CONTAINING PROTEIN |
OS493_031825-T1 | EXPRESSED PROTEIN |
OS493_031827-T1 | |
OS493_031830-T1 | |
OS493_031837-T1 | |
OS493_031838-T1 | |
OS493_031839-T1 | |
OS493_031840-T1 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_031842-T1 | |
OS493_031847-T1 | |
OS493_031848-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 12 |
OS493_031849-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9 |
OS493_031850-T1 | IFT57/HIPPI |
OS493_031851-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_031852-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_031853-T1 | SHORT STATURE HOMEOBOX |
OS493_031854-T1 | GENE, 32742-RELATED-RELATED |
OS493_031855-T1 | GENE 9195-RELATED-RELATED |
OS493_031856-T1 | GENE 9195-RELATED-RELATED |
OS493_031857-T1 | INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN,N-TERMINAL |
OS493_031858-T1 | |
OS493_031859-T1 | |
OS493_031860-T1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
OS493_031861-T1 | |
OS493_031862-T1 | |
OS493_031863-T1 | |
OS493_031864-T1 | |
OS493_031865-T1 | |
OS493_031866-T1 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_031867-T1 | SORTING NEXIN |
OS493_031868-T1 | SORTING NEXIN |
OS493_031869-T1 | |
OS493_031870-T1 | TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED |
OS493_031871-T1 | |
OS493_031872-T1 | SERINE/ARGININE RICH SPLICING FACTOR |
OS493_031873-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2D |
OS493_031874-T1 | I_LWEQ DOMAIN-CONTAINING PROTEIN |
OS493_031875-T1 | I_LWEQ DOMAIN-CONTAINING PROTEIN |
OS493_031876-T1 | |
OS493_031877-T1 | CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED |
OS493_031878-T1 | STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN |
OS493_031879-T1 | |
OS493_031880-T1 |