About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_031881-T1PHOSPHATE TRANSPORTER
OS493_031882-T1
OS493_031883-T1
OS493_031884-T1IMPACT-RELATED
OS493_031885-T1FAM11A, B PROTEIN
OS493_031886-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 43
OS493_031887-T1STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN
OS493_031888-T1AGAP008005-PA
OS493_031889-T1AGAP008005-PA
OS493_031890-T1AGAP008005-PA
OS493_031891-T1
OS493_031892-T1
OS493_031893-T1
OS493_031894-T1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
OS493_031895-T1
OS493_031896-T1ATP-DEPENDENT RNA HELICASE RHLE-RELATED
OS493_031898-T1
OS493_031899-T1
OS493_031900-T1
OS493_031901-T1
OS493_031902-T1
OS493_031903-T1
OS493_031904-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_031905-T1
OS493_031907-T1
OS493_031908-T1
OS493_031910-T1
OS493_031911-T1
OS493_031912-T1TIP120
OS493_031913-T1TIP120
OS493_031914-T1TIP120
OS493_031915-T1TIP120
OS493_031916-T1
OS493_031917-T1CAP BINDING PROTEIN
OS493_031918-T1TETRATRICOPEPTIDE REPEAT PROTEIN 38
OS493_031919-T1
OS493_031921-T1TETRATRICOPEPTIDE REPEAT PROTEIN 38
OS493_031922-T1
OS493_031923-T1TESTIS-EXPRESSED PROTEIN 15
OS493_031924-T1
OS493_031925-T1
OS493_031926-T1
OS493_031927-T1
OS493_031928-T1
OS493_031929-T1INTERFERON REGULATORY FACTOR
OS493_031930-T1INTERFERON REGULATORY FACTOR
OS493_031932-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_031933-T1THYROTROPH EMBRYONIC FACTOR RELATED
OS493_031934-T1RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT
OS493_031935-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 162
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