About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_012767-T1RING ZINC FINGER PROTEIN
OS493_012768-T1SERUM RESPONSE FACTOR HOMOLOG
OS493_012769-T1TETRATRICOPEPTIDE-LIKE HELICAL
OS493_012770-T1SEEDY PROTEIN A/C FAMILY MEMBER
OS493_012771-T1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
OS493_012772-T1-
OS493_012773-T1-
OS493_012774-T1UPF0692 PROTEIN C19ORF54
OS493_012775-T1PINN
OS493_012776-T1-
OS493_012777-T1FUCOSE-1-PHOSPHATE GUANYLYLTRANSFERASE
OS493_012778-T1TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B
OS493_012779-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_012780-T1-
OS493_012781-T1TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B
OS493_012782-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_012783-T1-
OS493_012784-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_012785-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_012786-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
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