About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_031988-T1
OS493_031989-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
OS493_031990-T1
OS493_031991-T1UPF0462 PROTEIN
OS493_031992-T1UNCHARACTERIZED
OS493_031993-T1UNCHARACTERIZED
OS493_031994-T1MITOCHONDRIAL INNER MEMBRANE PROTEASE
OS493_031995-T1U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2
OS493_031996-T1VERY-LONG-CHAIN 3-OXOOACYL-COA REDUCTASE
OS493_031997-T1
OS493_031998-T1
OS493_031999-T1BETA-GALACTOSIDASE RELATED
OS493_032000-T1BETA-GALACTOSIDASE RELATED
OS493_032001-T1SERINE/THREONINE-PROTEIN KINASE
OS493_032002-T1
OS493_032003-T1AMIDOPHOSPHORIBOSYLTRANSFERASE
OS493_032004-T1MULTIFUNCTIONAL PROTEIN ADE2
OS493_032005-T1CARRIER DOMAIN-CONTAINING PROTEIN
OS493_032006-T1VERY-LONG-CHAIN 3-OXOOACYL-COA REDUCTASE
OS493_032007-T1
OS493_032008-T1BETA-GALACTOSIDASE RELATED
OS493_032009-T1BETA-GALACTOSIDASE RELATED
OS493_032010-T1CALRETICULIN AND CALNEXIN
OS493_032011-T1N-ACETYLGLUCOSAMINYLTRANSFERASE VI
OS493_032013-T1JM1 PROTEIN
OS493_032014-T1JM1 PROTEIN
OS493_032015-T1CARRIER DOMAIN-CONTAINING PROTEIN
OS493_032016-T1MULTIFUNCTIONAL PROTEIN ADE2
OS493_032019-T1JM1 PROTEIN
OS493_032021-T1JM1 PROTEIN
OS493_032022-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
OS493_032023-T1
OS493_032024-T1NATTERIN-4
OS493_032025-T1NATTERIN-4
OS493_032026-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
OS493_032027-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
OS493_032028-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
OS493_032029-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
OS493_032030-T1-
OS493_032031-T1
OS493_032032-T1
OS493_032033-T1
OS493_032034-T1OPSIN
OS493_032036-T1
OS493_032037-T1
OS493_032038-T1TETRATRICOPEPTIDE REPEAT PROTEIN 32
OS493_032039-T1GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5
OS493_032040-T1
OS493_032041-T1
OS493_032042-T1H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1
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