About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_032095-T1GATA-TYPE ZINC FINGER PROTEIN 1
OS493_032096-T1
OS493_032097-T1
OS493_032098-T1
OS493_032099-T1
OS493_032100-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_032101-T1NOTCH LIGAND FAMILY MEMBER
OS493_032102-T1PROTEIN SIDEKICK
OS493_032103-T1
OS493_032104-T1
OS493_032106-T1
OS493_032107-T1NOTCH LIGAND FAMILY MEMBER
OS493_032108-T1PROTEIN SIDEKICK
OS493_032109-T1
OS493_032110-T1
OS493_032111-T1PROTEIN SIDEKICK
OS493_032112-T1
OS493_032113-T1
OS493_032114-T1UNCHARACTERIZED
OS493_032115-T1UNCHARACTERIZED
OS493_032116-T1XAP-5 PROTEIN-RELATED
OS493_032117-T1
OS493_032118-T1RGD1561648
OS493_032119-T1GLUTATHIONE REDUCTASE
OS493_032120-T1CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN
OS493_032121-T1CD59 GLYCOPROTEIN
OS493_032122-T1
OS493_032123-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1
OS493_032124-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1
OS493_032125-T1PHD FINGER PROTEINS
OS493_032126-T1COATOMER SUBUNIT GAMMA
OS493_032127-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_032128-T1
OS493_032130-T1
OS493_032131-T1I-KAPPA-B-LIKE PROTEIN IKBL
OS493_032132-T1
OS493_032133-T1CD59 GLYCOPROTEIN
OS493_032134-T1
OS493_032135-T1
OS493_032136-T1EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
OS493_032137-T1
OS493_032138-T1
OS493_032139-T1
OS493_032140-T1
OS493_032141-T1
OS493_032142-T1EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
OS493_032143-T1
OS493_032144-T1
OS493_032145-T1
OS493_032146-T1
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