Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_032420-T1 | - |
OS493_032422-T1 | INTELECTIN |
OS493_032423-T1 | |
OS493_032424-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
OS493_032425-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
OS493_032426-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
OS493_032427-T1 | |
OS493_032430-T1 | OPSIN |
OS493_032431-T1 | NOTCH LIGAND FAMILY MEMBER |
OS493_032432-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_032433-T1 | OPSIN |
OS493_032434-T1 | |
OS493_032435-T1 | |
OS493_032436-T1 | |
OS493_032437-T1 | |
OS493_032438-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
OS493_032439-T1 | RNA BINDING PROTEIN |
OS493_032440-T1 | |
OS493_032441-T1 | |
OS493_032442-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_032444-T1 | PRE-MRNA SPLICING FACTOR |
OS493_032445-T1 | |
OS493_032446-T1 | |
OS493_032447-T1 | |
OS493_032448-T1 | |
OS493_032449-T1 | |
OS493_032452-T1 | |
OS493_032453-T1 | RETINOBLASTOMA BINDING PROTEIN 8 |
OS493_032454-T1 | |
OS493_032455-T1 | EXOCYST COMPLEX COMPONENT SEC6-RELATED |
OS493_032456-T1 | |
OS493_032457-T1 | |
OS493_032458-T1 | EXOCYST COMPLEX COMPONENT SEC6-RELATED |
OS493_032459-T1 | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE |
OS493_032460-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
OS493_032461-T1 | |
OS493_032462-T1 | |
OS493_032463-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
OS493_032464-T1 | SLEI FAMILY PROTEIN |
OS493_032465-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
OS493_032466-T1 | PLASMINOGEN-RELATED |
OS493_032467-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_032468-T1 | TGF-BETA FAMILY |
OS493_032469-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 |
OS493_032471-T1 | |
OS493_032472-T1 | SEPIAPTERIN REDUCTASE |
OS493_032473-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_032474-T1 | COLLAGEN |
OS493_032475-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
OS493_032476-T1 |