About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_032420-T1-
OS493_032422-T1INTELECTIN
OS493_032423-T1
OS493_032424-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
OS493_032425-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
OS493_032426-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
OS493_032427-T1
OS493_032430-T1OPSIN
OS493_032431-T1NOTCH LIGAND FAMILY MEMBER
OS493_032432-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_032433-T1OPSIN
OS493_032434-T1
OS493_032435-T1
OS493_032436-T1
OS493_032437-T1
OS493_032438-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
OS493_032439-T1RNA BINDING PROTEIN
OS493_032440-T1
OS493_032441-T1
OS493_032442-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_032444-T1PRE-MRNA SPLICING FACTOR
OS493_032445-T1
OS493_032446-T1
OS493_032447-T1
OS493_032448-T1
OS493_032449-T1
OS493_032452-T1
OS493_032453-T1RETINOBLASTOMA BINDING PROTEIN 8
OS493_032454-T1
OS493_032455-T1EXOCYST COMPLEX COMPONENT SEC6-RELATED
OS493_032456-T1
OS493_032457-T1
OS493_032458-T1EXOCYST COMPLEX COMPONENT SEC6-RELATED
OS493_032459-T1UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
OS493_032460-T1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
OS493_032461-T1
OS493_032462-T1
OS493_032463-T1ZINC FINGER AND BTB DOMAIN-CONTAINING
OS493_032464-T1SLEI FAMILY PROTEIN
OS493_032465-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_032466-T1PLASMINOGEN-RELATED
OS493_032467-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_032468-T1TGF-BETA FAMILY
OS493_032469-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30
OS493_032471-T1
OS493_032472-T1SEPIAPTERIN REDUCTASE
OS493_032473-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_032474-T1COLLAGEN
OS493_032475-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_032476-T1
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