About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_032368-T1BETA-1,4-GALACTOSYLTRANSFERASE
OS493_032369-T1N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL BIOSYNTHETIC PROTEIN
OS493_032370-T1SERINE/THREONINE-PROTEIN KINASE
OS493_032371-T1
OS493_032372-T1IMMUNOGLOBULIN
OS493_032373-T1CONTACTIN 5
OS493_032374-T1RHO GUANINE EXCHANGE FACTOR-RELATED
OS493_032375-T1SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1
OS493_032376-T1RHO GUANINE EXCHANGE FACTOR-RELATED
OS493_032377-T1
OS493_032378-T1GLUTAMINE-TRNA LIGASE
OS493_032379-T1
OS493_032380-T1
OS493_032381-T1
OS493_032382-T1
OS493_032383-T1
OS493_032384-T1
OS493_032385-T1
OS493_032386-T1
OS493_032387-T1
OS493_032388-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_032389-T1
OS493_032391-T1
OS493_032392-T1
OS493_032393-T1
OS493_032394-T1
OS493_032395-T1
OS493_032396-T1
OS493_032397-T1
OS493_032398-T1
OS493_032399-T1
OS493_032400-T1
OS493_032401-T1
OS493_032403-T1
OS493_032404-T1
OS493_032405-T1MYND-TYPE DOMAIN-CONTAINING PROTEIN
OS493_032406-T1
OS493_032407-T1
OS493_032408-T1
OS493_032409-T1
OS493_032410-T1G-PROTEIN COUPLED RECEPTOR
OS493_032411-T1N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
OS493_032412-T1N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
OS493_032413-T1FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED
OS493_032414-T1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
OS493_032415-T1DNA DAMAGE-INDUCIBLE APOPTOSIS SUPPRESSOR PROTEIN DDIAS
OS493_032416-T1RAS-RELATED PROTEIN RAB
OS493_032417-T1-
OS493_032418-T1
OS493_032419-T1WINGED HELIX DOMAIN-CONTAINING PROTEIN
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