About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_032740-T1N-ACETYLGALACTOSAMINYLTRANSFERASE
OS493_032741-T1
OS493_032742-T1OPSIN
OS493_032744-T1N-ACETYLGALACTOSAMINYLTRANSFERASE
OS493_032745-T1N-ACETYLGALACTOSAMINYLTRANSFERASE
OS493_032746-T1N-ACETYLGALACTOSAMINYLTRANSFERASE
OS493_032747-T1UNCHARACTERIZED
OS493_032748-T1RPA-RELATED PROTEIN RADX
OS493_032749-T1FORMIMINOTRANSFERASE-CYCLODEAMINASE
OS493_032750-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_032751-T1
OS493_032752-T1GERANYLGERANYL PYROPHOSPHATE SYNTHASE
OS493_032754-T1
OS493_032755-T1
OS493_032756-T1LIPOCALIN-1 INTERACTING MEMBRANE RECEPTOR LIMR
OS493_032757-T1
OS493_032758-T1
OS493_032759-T1
OS493_032760-T1NUCLEOLAR GTP-BINDING PROTEIN 1
OS493_032761-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_032763-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_032764-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_032765-T1
OS493_032766-T1
OS493_032767-T1
OS493_032768-T1
OS493_032769-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_032770-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_032771-T1
OS493_032772-T13-5 EXONUCLEASE
OS493_032773-T1
OS493_032774-T1GLYCOSYLTRANSFERASE-LIKE 1
OS493_032775-T1
OS493_032776-T1N-LYSINE METHYLTRANSFERASE KMT5A
OS493_032777-T1
OS493_032778-T1
OS493_032779-T1
OS493_032780-T1
OS493_032781-T1
OS493_032782-T1
OS493_032783-T1
OS493_032784-T1
OS493_032785-T1
OS493_032786-T1
OS493_032787-T1
OS493_032788-T1
OS493_032789-T1
OS493_032790-T1TOL-PAL SYSTEM PROTEIN TOLA
OS493_032791-T1
OS493_032792-T1
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