About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_033132-T1ANKYRIN REPEAT DOMAIN 36-RELATED
OS493_033133-T1GALACTOSE-3-O-SULFOTRANSFERASE
OS493_033134-T1
OS493_033137-T1
OS493_033139-T1
OS493_033140-T1GLUTAMINE-TRNA LIGASE
OS493_033141-T1PROTEIN ATP6V1FNB-LIKE
OS493_033142-T1
OS493_033143-T1
OS493_033144-T1
OS493_033145-T1
OS493_033146-T1
OS493_033147-T1SERINE/THREONINE-PROTEIN KINASE PIM
OS493_033148-T1
OS493_033149-T1PROTON MYO-INOSITOL COTRANSPORTER
OS493_033150-T1
OS493_033151-T1
OS493_033152-T1
OS493_033153-T1
OS493_033154-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
OS493_033155-T1
OS493_033156-T1
OS493_033157-T1
OS493_033158-T1
OS493_033159-T1
OS493_033160-T1
OS493_033161-T1
OS493_033162-T1
OS493_033163-T1
OS493_033164-T1
OS493_033165-T1
OS493_033166-T1
OS493_033167-T1HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
OS493_033168-T1
OS493_033169-T1YIPPEE DOMAIN-CONTAINING PROTEIN
OS493_033170-T1
OS493_033171-T1
OS493_033172-T1
OS493_033173-T1LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN
OS493_033174-T1ACTIN
OS493_033176-T1LEUKOTRIENE A-4 HYDROLASE
OS493_033177-T1LEUKOTRIENE A-4 HYDROLASE
OS493_033178-T1LOC100145250 PROTEIN
OS493_033179-T1ENOYL-COA HYDRATASE-RELATED
OS493_033180-T1TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT MAPKAP1
OS493_033181-T1
OS493_033182-T1
OS493_033183-T1
OS493_033185-T1
OS493_033186-T1
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