About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_030257-T1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
LLU|FUN_030258-T1
LLU|FUN_030259-T1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
LLU|FUN_030260-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_030261-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_030262-T1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
LLU|FUN_030263-T1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
LLU|FUN_030264-T1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
LLU|FUN_030265-T1
LLU|FUN_030266-T1
LLU|FUN_030267-T1SI:DKEY-19B23.12-RELATED
LLU|FUN_030268-T1
LLU|FUN_030269-T1
LLU|FUN_030270-T1SI:DKEY-19B23.12-RELATED
LLU|FUN_030271-T1SI:DKEY-19B23.12-RELATED
LLU|FUN_030272-T1SI:DKEY-19B23.12-RELATED
LLU|FUN_030273-T1
LLU|FUN_030274-T1
LLU|FUN_030275-T1
LLU|FUN_030276-T1
LLU|FUN_030277-T1
LLU|FUN_030278-T1
LLU|FUN_030279-T1
LLU|FUN_030280-T1GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
LLU|FUN_030281-T1SULFATASE MODIFYING FACTOR 1, 2
LLU|FUN_030282-T1
LLU|FUN_030284-T1
LLU|FUN_030285-T1ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL
LLU|FUN_030286-T1ENDOSOME-ASSOCIATED TRAFFICKING REGULATOR 1
LLU|FUN_030287-T1
LLU|FUN_030288-T1TYROSINE AMINOTRANSFERASE
LLU|FUN_030289-T1
LLU|FUN_030290-T1CYTOCHROME B5
LLU|FUN_030291-T1REGULATOR OF MICROTUBULE DYNAMICS PROTEIN
LLU|FUN_030292-T1DYNEIN LIGHT CHAIN ROADBLOCK
LLU|FUN_030293-T1DER1-LIKE PROTEIN, DERLIN
LLU|FUN_030294-T1TYROSINE-PROTEIN KINASE
LLU|FUN_030295-T1
LLU|FUN_030296-T1
LLU|FUN_030297-T1RECEPTOR TRANSPORTING PROTEIN
LLU|FUN_030298-T1
LLU|FUN_030299-T1B-BOX DOMAIN CONTAINING
LLU|FUN_030300-T1
LLU|FUN_030301-T1RE38146P
LLU|FUN_030302-T1
LLU|FUN_030303-T1
LLU|FUN_030304-T1
LLU|FUN_030305-T1HISTIDINE-RICH GLYCOPROTEIN
LLU|FUN_030306-T1
LLU|FUN_030307-T1
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