About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_030104-T1
LLU|FUN_030105-T1PROTEIN CBG15099
LLU|FUN_030106-T1PROTEIN CBG15099
LLU|FUN_030107-T1PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
LLU|FUN_030108-T1
LLU|FUN_030109-T1
LLU|FUN_030110-T1PROTEIN CBG15099
LLU|FUN_030111-T1PROTEIN CBG15099
LLU|FUN_030112-T1GLUTAREDOXIN-1
LLU|FUN_030113-T1EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN
LLU|FUN_030114-T1IG-LIKE DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_030115-T1
LLU|FUN_030116-T1
LLU|FUN_030117-T1PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1
LLU|FUN_030118-T1SMALL NUCLEAR RIBONUCLEOPROTEIN SM
LLU|FUN_030119-T1
LLU|FUN_030120-T1
LLU|FUN_030121-T1MATRIX METALLOPROTEINASE
LLU|FUN_030122-T1TYROSINE-PROTEIN KINASE RECEPTOR
LLU|FUN_030123-T1TYROSINE-PROTEIN KINASE RECEPTOR
LLU|FUN_030124-T1
LLU|FUN_030125-T1
LLU|FUN_030126-T1EPM2A-INTERACTING PROTEIN 1
LLU|FUN_030127-T1
LLU|FUN_030128-T1
LLU|FUN_030129-T1
LLU|FUN_030130-T1HEAVY PROTEIN, PUTATIVE-RELATED
LLU|FUN_030131-T1V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT
LLU|FUN_030132-T1TRANSLATION INITIATION FACTOR EIF-2B
LLU|FUN_030133-T1PERFORIN-LIKE PROTEIN 1
LLU|FUN_030134-T1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
LLU|FUN_030135-T1
LLU|FUN_030136-T1
LLU|FUN_030139-T1
LLU|FUN_030140-T1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
LLU|FUN_030141-T1
LLU|FUN_030142-T1
LLU|FUN_030143-T1
LLU|FUN_030144-T1
LLU|FUN_030145-T1IA-2 PROTEIN TYROSINE PHOSPHATASE, ISOFORM C
LLU|FUN_030146-T1IA-2 PROTEIN TYROSINE PHOSPHATASE, ISOFORM C
LLU|FUN_030147-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
LLU|FUN_030148-T1
LLU|FUN_030149-T1SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1
LLU|FUN_030150-T1ZINC FINGER PROTEIN 622
LLU|FUN_030151-T1BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1
LLU|FUN_030152-T1BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1
LLU|FUN_030153-T1GROWTH FACTOR RECEPTOR-BOUND PROTEIN
LLU|FUN_030154-T1
LLU|FUN_030155-T1
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