Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_030104-T1 | |
LLU|FUN_030105-T1 | PROTEIN CBG15099 |
LLU|FUN_030106-T1 | PROTEIN CBG15099 |
LLU|FUN_030107-T1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
LLU|FUN_030108-T1 | |
LLU|FUN_030109-T1 | |
LLU|FUN_030110-T1 | PROTEIN CBG15099 |
LLU|FUN_030111-T1 | PROTEIN CBG15099 |
LLU|FUN_030112-T1 | GLUTAREDOXIN-1 |
LLU|FUN_030113-T1 | EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN |
LLU|FUN_030114-T1 | IG-LIKE DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_030115-T1 | |
LLU|FUN_030116-T1 | |
LLU|FUN_030117-T1 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 |
LLU|FUN_030118-T1 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM |
LLU|FUN_030119-T1 | |
LLU|FUN_030120-T1 | |
LLU|FUN_030121-T1 | MATRIX METALLOPROTEINASE |
LLU|FUN_030122-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
LLU|FUN_030123-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
LLU|FUN_030124-T1 | |
LLU|FUN_030125-T1 | |
LLU|FUN_030126-T1 | EPM2A-INTERACTING PROTEIN 1 |
LLU|FUN_030127-T1 | |
LLU|FUN_030128-T1 | |
LLU|FUN_030129-T1 | |
LLU|FUN_030130-T1 | HEAVY PROTEIN, PUTATIVE-RELATED |
LLU|FUN_030131-T1 | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT |
LLU|FUN_030132-T1 | TRANSLATION INITIATION FACTOR EIF-2B |
LLU|FUN_030133-T1 | PERFORIN-LIKE PROTEIN 1 |
LLU|FUN_030134-T1 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 |
LLU|FUN_030135-T1 | |
LLU|FUN_030136-T1 | |
LLU|FUN_030139-T1 | |
LLU|FUN_030140-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
LLU|FUN_030141-T1 | |
LLU|FUN_030142-T1 | |
LLU|FUN_030143-T1 | |
LLU|FUN_030144-T1 | |
LLU|FUN_030145-T1 | IA-2 PROTEIN TYROSINE PHOSPHATASE, ISOFORM C |
LLU|FUN_030146-T1 | IA-2 PROTEIN TYROSINE PHOSPHATASE, ISOFORM C |
LLU|FUN_030147-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
LLU|FUN_030148-T1 | |
LLU|FUN_030149-T1 | SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1 |
LLU|FUN_030150-T1 | ZINC FINGER PROTEIN 622 |
LLU|FUN_030151-T1 | BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 |
LLU|FUN_030152-T1 | BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 |
LLU|FUN_030153-T1 | GROWTH FACTOR RECEPTOR-BOUND PROTEIN |
LLU|FUN_030154-T1 | |
LLU|FUN_030155-T1 |