Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_029951-T1 | ZINC FINGER MYND DOMAIN-CONTAINING |
LLU|FUN_029952-T1 | |
LLU|FUN_029953-T1 | NOTCH LIGAND FAMILY MEMBER |
LLU|FUN_029954-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_029955-T1 | |
LLU|FUN_029956-T1 | |
LLU|FUN_029957-T1 | |
LLU|FUN_029958-T1 | MYOSIN LIGHT CHAIN 1, 3 |
LLU|FUN_029960-T1 | MITOTIC AND DNA DAMAGE CHECKPOINT PROTEIN HUS1 |
LLU|FUN_029961-T1 | |
LLU|FUN_029962-T1 | LOQUACIOUS, ISOFORM B |
LLU|FUN_029963-T1 | LOQUACIOUS, ISOFORM B |
LLU|FUN_029964-T1 | |
LLU|FUN_029965-T1 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
LLU|FUN_029966-T1 | HEME TRANSPORTER HRG1 |
LLU|FUN_029967-T1 | PERILIPIN 4 |
LLU|FUN_029968-T1 | EXTRA SPINDLE POLES 1-RELATED |
LLU|FUN_029969-T1 | |
LLU|FUN_029970-T1 | |
LLU|FUN_029971-T1 | |
LLU|FUN_029972-T1 | LEUCINE RICH REPEAT PROTEIN |
LLU|FUN_029973-T1 | |
LLU|FUN_029974-T1 | |
LLU|FUN_029976-T1 | |
LLU|FUN_029978-T1 | |
LLU|FUN_029979-T1 | |
LLU|FUN_029980-T1 | |
LLU|FUN_029981-T1 | |
LLU|FUN_029982-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
LLU|FUN_029983-T1 | |
LLU|FUN_029984-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
LLU|FUN_029985-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
LLU|FUN_029986-T1 | |
LLU|FUN_029987-T1 | |
LLU|FUN_029988-T1 | |
LLU|FUN_029989-T1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_029990-T1 | |
LLU|FUN_029991-T1 | UNCHARACTERIZED |
LLU|FUN_029992-T1 | STABILIN |
LLU|FUN_029993-T1 | G PATCH AND KOW-CONTAINING |
LLU|FUN_029994-T1 | SIMILAR TO DNA SEGMENT, CHR 10, WAYNE STATE UNIVERSITY 102,-EXPRESSED |
LLU|FUN_029995-T1 | DIVALENT CATION TRANSPORTER SOLUTE CARRIER FAMILY 41 |
LLU|FUN_029996-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_029997-T1 | HOMEOBOX PROTEIN ARISTALESS |
LLU|FUN_029998-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_029999-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_030000-T1 | DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 3 |
LLU|FUN_030001-T1 | SOLUTE CARRIER FAMILY 35 |
LLU|FUN_030002-T1 | |
LLU|FUN_030003-T1 |