About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_029742-T1
LLU|FUN_029743-T1
LLU|FUN_029744-T1
LLU|FUN_029745-T1
LLU|FUN_029746-T1SWIM-TYPE DOMAIN-CONTAINING PROTEIN
LLU|FUN_029747-T1SWIM-TYPE DOMAIN-CONTAINING PROTEIN
LLU|FUN_029748-T1
LLU|FUN_029749-T1THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC
LLU|FUN_029750-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
LLU|FUN_029751-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
LLU|FUN_029752-T1DED DOMAIN-CONTAINING PROTEIN
LLU|FUN_029753-T1DED DOMAIN-CONTAINING PROTEIN
LLU|FUN_029754-T1EF HAND DOMAIN FAMILY A1,A2-RELATED
LLU|FUN_029755-T1MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
LLU|FUN_029756-T1HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
LLU|FUN_029757-T1PRE-MRNA-SPLICING FACTOR RBM22
LLU|FUN_029758-T1PROLIFERATING CELL NUCLEAR ANTIGEN
LLU|FUN_029759-T1PHOSPHATIDATE CYTIDYLYLTRANSFERASE
LLU|FUN_029760-T1SEC31-RELATED PROTEIN
LLU|FUN_029761-T1SEC31-RELATED PROTEIN
LLU|FUN_029762-T1GLUTATHIONE S-TRANSFERASE
LLU|FUN_029763-T1GLUTATHIONE S-TRANSFERASE
LLU|FUN_029764-T1GLUTATHIONE S-TRANSFERASE
LLU|FUN_029765-T1
LLU|FUN_029766-T1GLUTATHIONE S-TRANSFERASE
LLU|FUN_029767-T1
LLU|FUN_029768-T1PROMETHIN
LLU|FUN_029769-T1TYROSYL-TRNA SYNTHETASE
LLU|FUN_029770-T1
LLU|FUN_029771-T1DED DOMAIN-CONTAINING PROTEIN
LLU|FUN_029772-T1
LLU|FUN_029773-T1PROTEIN CBG11604
LLU|FUN_029774-T1
LLU|FUN_029775-T1
LLU|FUN_029776-T1HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
LLU|FUN_029777-T1LP21163P
LLU|FUN_029778-T1
LLU|FUN_029779-T1RNA AND EXPORT FACTOR BINDING PROTEIN
LLU|FUN_029780-T1UBIQUITIN-CONJUGATING ENZYME E2
LLU|FUN_029781-T1ADP-RIBOSYLATION-LIKE FACTOR 6-INTERACTING PROTEIN
LLU|FUN_029782-T1AMINE OXIDASE
LLU|FUN_029783-T1RP42 RELATED
LLU|FUN_029784-T1
LLU|FUN_029785-T1
LLU|FUN_029786-T1PROTEIN PHOSPHATASE 2C
LLU|FUN_029787-T1
LLU|FUN_029788-T1LYR MOTIF-CONTAINING PROTEIN 1
LLU|FUN_029789-T1CENTROSOMAL PROTEIN 2
LLU|FUN_029790-T1COLLAGEN ALPHA
LLU|FUN_029791-T1
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