Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_029742-T1 | |
LLU|FUN_029743-T1 | |
LLU|FUN_029744-T1 | |
LLU|FUN_029745-T1 | |
LLU|FUN_029746-T1 | SWIM-TYPE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_029747-T1 | SWIM-TYPE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_029748-T1 | |
LLU|FUN_029749-T1 | THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC |
LLU|FUN_029750-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_029751-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_029752-T1 | DED DOMAIN-CONTAINING PROTEIN |
LLU|FUN_029753-T1 | DED DOMAIN-CONTAINING PROTEIN |
LLU|FUN_029754-T1 | EF HAND DOMAIN FAMILY A1,A2-RELATED |
LLU|FUN_029755-T1 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
LLU|FUN_029756-T1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
LLU|FUN_029757-T1 | PRE-MRNA-SPLICING FACTOR RBM22 |
LLU|FUN_029758-T1 | PROLIFERATING CELL NUCLEAR ANTIGEN |
LLU|FUN_029759-T1 | PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
LLU|FUN_029760-T1 | SEC31-RELATED PROTEIN |
LLU|FUN_029761-T1 | SEC31-RELATED PROTEIN |
LLU|FUN_029762-T1 | GLUTATHIONE S-TRANSFERASE |
LLU|FUN_029763-T1 | GLUTATHIONE S-TRANSFERASE |
LLU|FUN_029764-T1 | GLUTATHIONE S-TRANSFERASE |
LLU|FUN_029765-T1 | |
LLU|FUN_029766-T1 | GLUTATHIONE S-TRANSFERASE |
LLU|FUN_029767-T1 | |
LLU|FUN_029768-T1 | PROMETHIN |
LLU|FUN_029769-T1 | TYROSYL-TRNA SYNTHETASE |
LLU|FUN_029770-T1 | |
LLU|FUN_029771-T1 | DED DOMAIN-CONTAINING PROTEIN |
LLU|FUN_029772-T1 | |
LLU|FUN_029773-T1 | PROTEIN CBG11604 |
LLU|FUN_029774-T1 | |
LLU|FUN_029775-T1 | |
LLU|FUN_029776-T1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
LLU|FUN_029777-T1 | LP21163P |
LLU|FUN_029778-T1 | |
LLU|FUN_029779-T1 | RNA AND EXPORT FACTOR BINDING PROTEIN |
LLU|FUN_029780-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
LLU|FUN_029781-T1 | ADP-RIBOSYLATION-LIKE FACTOR 6-INTERACTING PROTEIN |
LLU|FUN_029782-T1 | AMINE OXIDASE |
LLU|FUN_029783-T1 | RP42 RELATED |
LLU|FUN_029784-T1 | |
LLU|FUN_029785-T1 | |
LLU|FUN_029786-T1 | PROTEIN PHOSPHATASE 2C |
LLU|FUN_029787-T1 | |
LLU|FUN_029788-T1 | LYR MOTIF-CONTAINING PROTEIN 1 |
LLU|FUN_029789-T1 | CENTROSOMAL PROTEIN 2 |
LLU|FUN_029790-T1 | COLLAGEN ALPHA |
LLU|FUN_029791-T1 |