Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_030054-T1 | |
LLU|FUN_030055-T1 | |
LLU|FUN_030056-T1 | |
LLU|FUN_030057-T1 | ACID PHOSPHATASE-RELATED |
LLU|FUN_030058-T1 | |
LLU|FUN_030059-T1 | |
LLU|FUN_030060-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
LLU|FUN_030061-T1 | SI:DKEY-122A22.2 |
LLU|FUN_030062-T1 | TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN |
LLU|FUN_030063-T1 | SERINE/THREONINE-PROTEIN KINASE RIO1 |
LLU|FUN_030064-T1 | PROTEIN KINASE C-BINDING PROTEIN 1 |
LLU|FUN_030065-T1 | TRANSLOCATION ASSOCIATED MEMBRANE PROTEIN |
LLU|FUN_030066-T1 | PH DOMAIN-CONTAINING PROTEIN |
LLU|FUN_030067-T1 | |
LLU|FUN_030068-T1 | |
LLU|FUN_030069-T1 | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE |
LLU|FUN_030070-T1 | |
LLU|FUN_030071-T1 | DESTABILASE-RELATED |
LLU|FUN_030072-T1 | |
LLU|FUN_030073-T1 | DESTABILASE-RELATED |
LLU|FUN_030074-T1 | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE |
LLU|FUN_030075-T1 | DESTABILASE-RELATED |
LLU|FUN_030076-T1 | PROTEIN CBG26694 |
LLU|FUN_030077-T1 | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE |
LLU|FUN_030078-T1 | |
LLU|FUN_030079-T1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
LLU|FUN_030080-T1 | DESTABILASE-RELATED |
LLU|FUN_030081-T1 | DESTABILASE-RELATED |
LLU|FUN_030082-T1 | FMRFAMIDE RECEPTOR-RELATED |
LLU|FUN_030083-T1 | |
LLU|FUN_030084-T1 | |
LLU|FUN_030085-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_030086-T1 | DESTABILASE-RELATED |
LLU|FUN_030087-T1 | |
LLU|FUN_030088-T1 | |
LLU|FUN_030089-T1 | |
LLU|FUN_030090-T1 | |
LLU|FUN_030091-T1 | - |
LLU|FUN_030092-T1 | |
LLU|FUN_030093-T1 | |
LLU|FUN_030094-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
LLU|FUN_030095-T1 | |
LLU|FUN_030096-T1 | BONUS, ISOFORM C-RELATED |
LLU|FUN_030097-T1 | - |
LLU|FUN_030098-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_030099-T1 | |
LLU|FUN_030100-T1 | |
LLU|FUN_030101-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_030102-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
LLU|FUN_030103-T1 |