About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_030409-T1ARMADILLO REPEAT-CONTAINING PROTEIN 1
LLU|FUN_030410-T1ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1
LLU|FUN_030411-T1DUAL SPECIFICITY PROTEIN PHOSPHATASE
LLU|FUN_030412-T1RNA 3' TERMINAL PHOSPHATE CYCLASE
LLU|FUN_030413-T1DNA EXCISION REPAIR PROTEIN ERCC-8
LLU|FUN_030414-T1HISTONE DEACETYLASE HDAC1-RELATED
LLU|FUN_030415-T1GLYCINE DEHYDROGENASE, DECARBOXYLATING
LLU|FUN_030416-T1NARDILYSIN
LLU|FUN_030417-T1SOLUTE CARRIER FAMILY 17
LLU|FUN_030418-T1
LLU|FUN_030419-T1
LLU|FUN_030420-T1
LLU|FUN_030421-T1PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED
LLU|FUN_030422-T1
LLU|FUN_030423-T1
LLU|FUN_030424-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
LLU|FUN_030425-T1COBW-RELATED
LLU|FUN_030426-T1
LLU|FUN_030427-T1
LLU|FUN_030428-T1
LLU|FUN_030429-T1
LLU|FUN_030430-T1FORKHEAD BOX PROTEIN
LLU|FUN_030431-T1
LLU|FUN_030432-T1
LLU|FUN_030433-T1
LLU|FUN_030434-T1
LLU|FUN_030435-T1MOLTING PROTEIN MLT-4
LLU|FUN_030436-T1ALPHA-GLUCOSIDASE
LLU|FUN_030437-T1ALPHA-GLUCOSIDASE
LLU|FUN_030438-T1
LLU|FUN_030439-T1INACTIVE POLYGLYCYLASE TTLL10
LLU|FUN_030440-T1PROTEIN MAGO NASHI HOMOLOG
LLU|FUN_030441-T1SYNAPTIC VESICLE GLYCOPROTEIN 2
LLU|FUN_030442-T1
LLU|FUN_030443-T1-
LLU|FUN_030444-T1PCNA-INTERACTING PARTNER
LLU|FUN_030445-T1MRG-BINDING PROTEIN
LLU|FUN_030446-T1FMRFAMIDE RECEPTOR-RELATED
LLU|FUN_030447-T1
LLU|FUN_030448-T1
LLU|FUN_030449-T1ALL-TRANS RETINOIC ACID-INDUCED DIFFERENTIATION FACTOR
LLU|FUN_030450-T1TEKTIN
LLU|FUN_030451-T1
LLU|FUN_030452-T1FORKHEAD BOX PROTEIN
LLU|FUN_030453-T1
LLU|FUN_030454-T1FORKHEAD BOX PROTEIN
LLU|FUN_030455-T1ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
LLU|FUN_030456-T1ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
LLU|FUN_030457-T1RNA POLYMERASE-ASSOCIATED PROTEIN CTR9
LLU|FUN_030458-T1SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
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