Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_61313-1.13 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 |
| Bpl_scaf_61313-1.18 | DNA REPAIR PROTEIN XRCC2 |
| Bpl_scaf_61317-0.1 | |
| Bpl_scaf_61317-0.9 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_61317-1.3 | UNCHARACTERIZED |
| Bpl_scaf_61317-1.4 | LEUCOKININ RECEPTOR-RELATED |
| Bpl_scaf_61330-1.5 | EPITHELIAL MEMBRANE PROTEIN-RELATED |
| Bpl_scaf_61340-0.4 | PROTEIN LIN-7 HOMOLOG |
| Bpl_scaf_61340-0.5 | EG:80H7.2 PROTEIN |
| Bpl_scaf_61340-0.6 | ALDO/KETO REDUCTASE |
| Bpl_scaf_61340-1.1 | GUANYLYL CYCLASE |
| Bpl_scaf_61340-10.5 | MATRIN 3/NUCLEAR PROTEIN 220-RELATED |
| Bpl_scaf_61340-11.12 | DEDICATOR OF CYTOKINESIS DOCK |
| Bpl_scaf_61340-13.5 | |
| Bpl_scaf_61340-13.6 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
| Bpl_scaf_61340-14.13 | FAT ATYPICAL CADHERIN-RELATED |
| Bpl_scaf_61340-14.14 | CERAMIDE GLUCOSYLTRANSFERASE |
| Bpl_scaf_61340-15.6 | DIOXYGENASE RV0097-RELATED |
| Bpl_scaf_61340-15.7 | DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN |
| Bpl_scaf_61340-16.10 | |
| Bpl_scaf_61340-2.10 | |
| Bpl_scaf_61340-2.9 | SYNTAXIN |
| Bpl_scaf_61340-3.11 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Bpl_scaf_61340-3.12 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Bpl_scaf_61340-3.4 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
| Bpl_scaf_61340-4.21 | TRIMERIC INTRACELLULAR CATION CHANNEL |
| Bpl_scaf_61340-4.8 | OSMOSIS RESPONSIVE FACTOR |
| Bpl_scaf_61340-4.9 | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 |
| Bpl_scaf_61340-5.13 | RHO-GTPASE-ACTIVATING PROTEIN LRG1 |
| Bpl_scaf_61340-5.19 | HILLARIN |
| Bpl_scaf_61340-5.20 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| Bpl_scaf_61340-5.7 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_61340-6.10 | UNCHARACTERIZED |
| Bpl_scaf_61340-6.11 | MEMBRALIN/KINETOCHORE PROTEIN NUF2 |
| Bpl_scaf_61340-6.21 | LEPTIN RECEPTOR-RELATED |
| Bpl_scaf_61340-6.9 | AAA-FAMILY ATPASE |
| Bpl_scaf_61340-8.11 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_61340-8.27 | PROTEIN PATCHED |
| Bpl_scaf_61340-8.28 | PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED |
| Bpl_scaf_61340-9.17 | DNAJ PROTEIN ERDJ3A |
| Bpl_scaf_61340-9.7 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| Bpl_scaf_61340-9.8 | CYTOCHROME C1 HEME LYASE |
| Bpl_scaf_61342-0.3 | |
| Bpl_scaf_61345-1.1 | |
| Bpl_scaf_61345-1.11 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_61345-1.13 | UNCHARACTERIZED |
| Bpl_scaf_61345-1.16 | |
| Bpl_scaf_61345-1.7 | |
| Bpl_scaf_61345-1.8 | |
| Bpl_scaf_61347-0.0 |
