Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_6090-10.1 | ZINC FINGER PROTEIN |
| Bpl_scaf_6090-10.11 | - |
| Bpl_scaf_6090-10.13 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_6090-10.18 | UNCHARACTERIZED |
| Bpl_scaf_6090-10.23 | |
| Bpl_scaf_6090-2.13 | INTEGRATOR COMPLEX SUBUNIT 3 |
| Bpl_scaf_6090-2.17 | TEMPTIN |
| Bpl_scaf_6090-2.19 | BRORIN FAMILY MEMBER |
| Bpl_scaf_6090-2.9 | BRORIN FAMILY MEMBER |
| Bpl_scaf_6090-3.5 | TRANSPOSON |
| Bpl_scaf_6090-3.7 | TRANSPOSON |
| Bpl_scaf_6090-3.8 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Bpl_scaf_6090-3.9 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_6090-4.10 | HOMER |
| Bpl_scaf_6090-4.12 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
| Bpl_scaf_6090-4.9 | |
| Bpl_scaf_6090-5.11 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| Bpl_scaf_6090-5.18 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_6090-5.19 | CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 1 |
| Bpl_scaf_6090-5.20 | CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 1 |
| Bpl_scaf_6090-6.12 | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA |
| Bpl_scaf_6090-6.13 | |
| Bpl_scaf_6090-6.29 | LSM1 |
| Bpl_scaf_6090-6.7 | ZINC/IRON TRANSPORTER |
| Bpl_scaf_6090-6.9 | HOMEOBOX PROTEIN HMX |
| Bpl_scaf_6090-7.17 | WD40 REPEAT PF20 |
| Bpl_scaf_6090-7.18 | BETA-1,4-GALACTOSYLTRANSFERASE |
| Bpl_scaf_6090-7.20 | MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED |
| Bpl_scaf_6090-7.8 | |
| Bpl_scaf_6090-8.1 | |
| Bpl_scaf_6090-9.0 | |
| Bpl_scaf_6090-9.1 | |
| Bpl_scaf_6090-9.11 | ANTIGEN KI-67-LIKE PROTEIN |
| Bpl_scaf_6090-9.9 | |
| Bpl_scaf_60908-2.10 | CYTOCHROME B561-RELATED |
| Bpl_scaf_60908-2.5 | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE |
| Bpl_scaf_60908-3.14 | SOLUTE CARRIER FAMILY 40 MEMBER |
| Bpl_scaf_60908-3.19 | OXIDASE/PEROXIDASE |
| Bpl_scaf_60908-4.10 | PUTATIVE-RELATED |
| Bpl_scaf_60908-4.14 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| Bpl_scaf_60908-4.20 | OS05G0300700 PROTEIN |
| Bpl_scaf_60908-4.21 | HIGH MOBILITY GROUP PROTEIN 2 |
| Bpl_scaf_60908-4.6 | SOLUTE CARRIER FAMILY 40 MEMBER |
| Bpl_scaf_60913-0.1 | |
| Bpl_scaf_60913-0.5 | |
| Bpl_scaf_60913-0.6 | |
| Bpl_scaf_60925-0.4 | |
| Bpl_scaf_60925-0.5 | |
| Bpl_scaf_60925-0.6 | |
| Bpl_scaf_60944-0.22 |
